Hi All,
I need some help on proteins. I am developing a program to stitch amino
acids templates and generate a linear polypeptide chain. The program is
similar to the sequence command in amber.
I am facing a problem in stitching the proline residue becoz of the cyclic
structure. I have stiching AAAAPA. the first four alanine are in same
plane,but the last alanine is out of the plane of proline.
Can you help me in figuring out a way to solve the proline problem.
How does amber stitch proline so efficiently??
thanks in advance
priyanka
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Received on Sat Oct 30 2010 - 09:00:03 PDT
