Re: [AMBER] Can we run sanders on GPU ?

From: c00jsw00 <c00jsw00.nchc.org.tw>
Date: Tue, 26 Oct 2010 13:59:58 +0800

Hi,
The openMM can do it. (https://simtk.org/home/openmm)
YT
On Mon, 25 Oct 2010 22:38:37 -0700, "Ross Walker" <ross.rosswalker.co.uk>
wrote:
> Dear Setyanto,
>
>> We have amber 10 in our laboratory. With GPU computing technology, we
>> would
>> like to know if it is possibly to run Sander on GPU ?
>> If yes, could some body help us, how to do it ?
>
> You cannot currently run sander on GPUs. However AMBER 11 supports use
of
> GPUs (NVIDIA SM1.3/2.0 and later) for acceleration of pmemd runs.
>
> See: http://ambermd.org/gpus/
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> ---------------------------------------------------------
> | Assistant Research Professor |
> | San Diego Supercomputer Center |
> | Adjunct Assistant Professor |
> | Dept. of Chemistry and Biochemistry |
> | University of California San Diego |
> | NVIDIA Fellow |
> | http://www.rosswalker.co.uk | http://www.wmd-lab.org/ |
> | Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
> ---------------------------------------------------------
>
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Received on Mon Oct 25 2010 - 23:00:11 PDT
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