[AMBER] Measure relative orientations in amber 9

From: Neha Gandhi <n.gandhiau.gmail.com>
Date: Sat, 23 Oct 2010 16:38:22 +0800

Hi List,

I am simulating a cytokine system with two anti-parallel helices. There is
shearing movement observed in these helices during the simulation. Although
i can measure inter-helical distance, I m interested in change in relative
orientations of these helices with respect to one another. how do I achieve
this with ptraj?

Your prompt feedback is welcome.
Many thanks

-- 
Regards,
Neha Gandhi,
School of Biomedical Sciences,
Curtin University of Technology,
GPO Box U1987 Perth,
Western Australia 6845
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Received on Sat Oct 23 2010 - 02:00:03 PDT
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