[AMBER] binding affinity calculation

From: Sangita Kachhap <sangita.imtech.res.in>
Date: Mon, 18 Oct 2010 18:04:45 +0530 (IST)

hello all

I want to calculate binding affinity of two protein to its cognate DNA i.e.
binding affinity for a protein bound its
cognate DNA and then binding of second protein which seems to increase the
binding affinity of first protein to DNA to above complex.

Can I use MD simulatiion here to calculate it?
Is AMBER usefull for it if yes then which module?

Sangita Kachhap
JRF
BIC,IMTECH
CHANDIGARH

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Received on Mon Oct 18 2010 - 06:00:05 PDT
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