Hi all,
I have a pdb file which loads into xleap, using the loadpdb command. Because the hydrogen naming convention is not what xleap expects, I strip the hydrogens using the awk command, previously mentioned in the mailing list. When I attempt to load the pdb with no hydrogens, xleap crashes and I get segmentation fault.
/cm/shared/aaps/amber10/amber11/exe/xleap: line 19: 26188 Segmentation fault $AMBERHOME/bin/xaLeap -I$AMBERHOME/dat/leap/prep -I$AMBERHOME/dat/leap/lib -I$AMBERHOME/dat/leap/parm -I$AMBERHOME/dat/leap/cmd $*
Any suggestions on how to diagnose the problem and resolve this issue?
Many Thanx,
Maura
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Received on Wed Oct 13 2010 - 11:00:04 PDT
