Re: [AMBER] limitation of the protein size

From: Bill Ross <ross.cgl.ucsf.EDU>
Date: Tue, 12 Oct 2010 21:04:42 -0700

> I've tried to build a starting structure of a protein with 449 residues.
> However, it seems to be overloaded in *leap*.

What are you seeing? (Copy/paste beats a description.)

> Does Amber set limitation of the number of the residues?

You are more likely to be seeing an operating system limit on memory.
Try the 'limit' command if you have it.

Bill

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Received on Tue Oct 12 2010 - 21:30:02 PDT
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