Thank you jason,
Last day I was trying to create prmchk library of phosphorylated residue
using antechamber, and after uploading these force field library tleap
interpreted protein correctly. Will these work
On Thu, Oct 7, 2010 at 11:24 PM, Jason Swails <jason.swails.gmail.com>wrote:
> If the parameters you're looking for are not on
> http://www.pharmacy.manchester.ac.uk/bryce/amber, you'll have to create a
> force field library (mol2 or amber prep) and load the library into leap.
> R.E.D. is a good choice of software to use for this task. There is plenty
> of documentation on its use and it has a very active, helpful help
> community. R.E.D. is linked to from ambermd.org.
>
> Good luck!
> Jason
>
> On Thu, Oct 7, 2010 at 12:43 PM, priyanka <baljinder7.gmail.com> wrote:
>
> > Greetings to all,
> >
> > I am trying to simulate protein in which some residues are
> phosphorylated,
> > i
> > tried to search AMBER parameter database but didnt come up with solution.
> > Kindly tell me how to modify my protein to get tleap interpretation
> > correctly.
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Graduate Student
> 352-392-4032
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> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Oct 07 2010 - 21:00:03 PDT
