On Mon, Oct 4, 2010 at 7:18 PM, Seibold, Stephen <Seibold79.stmary.edu> wrote:
>
> Ptraj AmberTools 4.1 will read my trajectory files fine. It is only when it goes to print out data to a file that I get this "segmentation" fault.
>
If you use the 'distance' command without the 'out' keyword does the
segmentation fault still occur?
Also, since I can't reproduce the error locally it may help if you
could run the ptraj job that results in the segfault with some
debugging information turned on - just add the command 'prnlev 5' to
the top of your ptraj input file. Send me the entire output (stdout
and stderr), e.g.:
ptraj.in:
prnlev 5
trajin mdcrd
distance d1 :1 :2 out test.dat
ptraj TOP ptraj.in > ptraj.out 2>&1
Thanks.
-Dan
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Received on Mon Oct 04 2010 - 21:00:03 PDT
