Hi Subrata,
I think you are wrong while loading your trajectories. Use "Amber
Coordinates with periodic box" as the file type in place of only "Amber
Coordinates"
Cheers,
Hirdesh
On Mon, Oct 4, 2010 at 4:34 PM, subrata paul <paul.subrata34.gmail.com>wrote:
> Dear sir
>
> I am simulating 10 disaccharide and 1000 water molecule. I done MD
> simulation.when I see the xxxx.prmtop and xxxxx.mdcrd in VMD it gave a bad
> structure ( looks like some line) .But when I see the minimized pdb {
> converting xxxx.rst to xxxx.pdb } , it look like a good structure . Why it
> is happen??? please help me regarding this.
>
>
> thanking you
> subrata
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Received on Mon Oct 04 2010 - 04:30:04 PDT
