Dear all,
I have a protein with 4 helices. All the 4 N terminals connect to the
same organic molecule. No matter how I use "remove" or "bond" commands in
the leap program, I can always get only one N terminal of a helix which
attaches the molecule and all the other three keep unattached, because I
always observe the "N3" atom type instead of "N" for the other 3 N-terminal
amino acids. Is it any way that the leap program can disable looking for N
terminals? In my case the organic molecule plays the role of 4 N terminals.
Thanks ahead,
Hugh
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sun Sep 26 2010 - 22:00:05 PDT