[AMBER] Query about restraint minimization

From: hirdesh kumar <hirdeshs8.gmail.com>
Date: Sat, 25 Sep 2010 13:23:57 +0530

Hi All;
I am trying to minimize my prepared protein in TIP3P box. I am following the
tutorial for the sander command (
http://ambermd.org/tutorials/advanced/tutorial8/loop5.htm). But the sander
required the .rst file for minimization. And from my previous step of
protein preparation using tleap I have only .parm7 and .crd files. I am
following the simple copy conversion of protein.crd to protein.rst.
I want to cross check whether doing so is correct or not???

Thanks,
Hirdesh
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Received on Sat Sep 25 2010 - 01:00:04 PDT
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