Thanks to quick reply
sorry for incomplete mail
Error which I have got was :
[sangita.localhost src]$ make parallel > amber-6.log &
[1] 8628
[sangita.localhost src]$ ifort: command line warning #10006: ignoring unknown
option '-ffree-form'
: error #5149: Illegal character in statement label field [m]
: error #5149: Illegal character in statement label field [o]
: error #5149: Illegal character in statement label field [d]
: error #5149: Illegal character in statement label field [u]
: error #5149: Illegal character in statement label field [l]
: error #5118: First statement in file must not be continued
_constants.f(223): error #5149: Illegal character in statement label field [i]
integer, parameter :: RETIRED_INPUT_OPTION = -10301 ! first 5 digit palindromic
prime
^
_constants.f(223): error #5149: Illegal character in statement label field [n]
integer, parameter :: RETIRED_INPUT_OPTION = -10301 ! first 5 digit palindromic
prime
-^
_constants.f(223): error #5149: Illegal character in statement label field [t]
integer, parameter :: RETIRED_INPUT_OPTION = -10301 ! first 5 digit palindromic
prime
--^
_constants.f(223): error #5149: Illegal character in statement label field [e]
integer, parameter :: RETIRED_INPUT_OPTION = -10301 ! first 5 digit palindromic
prime
---^
_constants.f(223): error #5149: Illegal character in statement label field [g]
integer, parameter :: RETIRED_INPUT_OPTION = -10301 ! first 5 digit palindromic
prime
----^
_constants.f(224): error #5149: Illegal character in statement label field [i]
integer, parameter :: NO_INPUT_VALUE = 12344321 ! from Bob Duke
^
_constants.f(224): error #5149: Illegal character in statement label field [n]
integer, parameter :: NO_INPUT_VALUE = 12344321 ! from Bob Duke
-^
_constants.f(224): error #5149: Illegal character in statement label field [t]
integer, parameter :: NO_INPUT_VALUE = 12344321 ! from Bob Duke
--^
_constants.f(224): error #5149: Illegal character in statement label field [e]
integer, parameter :: NO_INPUT_VALUE = 12344321 ! from Bob Duke
---^
_constants.f(224): error #5149: Illegal character in statement label field [g]
integer, parameter :: NO_INPUT_VALUE = 12344321 ! from Bob Duke
----^
_constants.f(226): error #5149: Illegal character in statement label field [e]
end module constants
^
_constants.f(226): error #5149: Illegal character in statement label field [n]
end module constants
-^
_constants.f(226): error #5149: Illegal character in statement label field [d]
end module constants
--^
_constants.f(226): error #5149: Illegal character in statement label field [m]
end module constants
----^
_constants.f(223): error #5082: Syntax error, found ',' when expecting one of: (
% : . = =>
integer, parameter :: RETIRED_INPUT_OPTION = -10301 ! first 5 digit palindromic
prime
-------^
_constants.f(223): error #5082: Syntax error, found '=' when expecting one of: (
* ) :: , <END-OF-STATEMENT> ; + . - % (/ [ : ] /) . ** / // ...
integer, parameter :: RETIRED_INPUT_OPTION = -10301 ! first 5 digit palindromic
prime
-------------------------------------------^
_constants.f(227): error #5082: Syntax error, found END-OF-FILE when expecting
one of: <END-OF-STATEMENT> ; <LABEL> BLOCK BLOCKDATA PROGRAM MODULE TYPE COMPLEX
BYTE ...
^
compilation aborted for _constants.f (code 1)
make[1]: *** [constants.o] Error 1
make: *** [parallel] Error 2
mpif90 -show gave following output:
ifort -I/home/sangita/mpich2-install/include
-I/home/sangita/mpich2-install/include -L/home/sangita/mpich2-install/lib
-L/home/sangita/mpich2-install/lib -lmpichf90 -lmpichf90 -lmpich -lopa -lpthread
-lrt
When I ran configure_openmpi it telles that compiler is not supported
[sangita.localhost src]$ ./configure_openmpi
Setting AMBERHOME to /home/sangita/amber11/AmberTools
Architecture/compiler is not supported
Usage: ./configure_openmpi [flags] compiler
where compiler is one of:
gnu (=gcc/gfortran), intel (=icc/ifort), pgi (=pgcc/pgf90),
solaris (=cc/f90)
Option flags:
-static Create statically linked executables (not recommended for
MacOSX)
Note: See http://www.open-mpi.org/software/ompi/v1.4/ for information
on how to obtain openmpi.
> On Thu, Sep 23, 2010, Sangita Kachhap wrote:
>>
>> I have installed amber11 in serial using gnu compiler for
>> AmberTool1.4. But when compiling it in parallel using same and mpicc of
>> Mpich2 which I have installed in my home directory it is giving follwing
>> error:
>>
>> compilation aborted for _constants.f (code 1)
>> make[1]: *** [constants.o] Error 1
>
> We need more information about the error messages: there must have been
> something before the snippet you quote above.
>
> I think the constants.f is the first file that is compiled in a parallel
> install, so there is probably something wrong with the compiler. Note that
> constants.f is a fortran file, so the key quantity is mpif90, not mpicc.
> What does "mpif90 -show" report?
>
> The easiest and recommended path for parallel installations is to run the
> "configure_openmpi" script in $AMBERHOME/AmberTools/src, and to use that
> installation (which will automatically be in your PATH if your PATH includes
> $AMBERHOME/bin). We know that this is configured correctly, and works for
> all the compilers we support.
>
> The case where this won't work is if you have a specialized interconnect (say,
> infiniband) which is not supported by generic openmpi. Even then, I would
> recommend using "configure_openmpi" first, so that you will have a baseline
> and some experience, before trying to link to an external MPI library.
>
> ....hope this helps....dac
>
>
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>
>
Sangita Kachhap
JRF
BIC,IMTECH
CHANDIGARH
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Received on Thu Sep 23 2010 - 10:00:05 PDT
