For what reason you was to compile parallel version of AT, as none of its
exes scales on the multiprocessor (as for as I know). Can you post your
configure.h file so that people can have look on it.
On Fri, Sep 17, 2010 at 11:17 AM, Anuradha Mittal <anuradha.mittal.gmail.com
> wrote:
> On Fri, Sep 17, 2010 at 7:09 AM, case <case.biomaps.rutgers.edu> wrote:
>
> > On Thu, Sep 16, 2010, Anuradha Mittal wrote:
> >
> > > mpicc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DMPI -o
> > > wallclock.o wallclock.c
> > > wallclock.c(25): error: incomplete type is not allowed
> > > struct timezone tz;
> > > ^
> >
> > This is a pretty weird error, that I have never seen before. I'm
> > assuming(?)
> > that this compiled file when you did your serial installation.
> >
>
> Yes, the file compiled fine serially.
>
>
> > What does "mpicc -show" report? What compiler and OS are you using? Is
> > there
> > evidence that mpicc is referencing a compiler that is different than the
> > one
> > you used for serial builds?
> >
>
> icc -g -O2 -D_XOPEN_SOURCE=600 -L/usr/local/ofed/lib64 -
> I/usr/local/packages/mvapich2/1.4/intel-11.1/include
> -L/usr/local/packages/mvapich2/1.4/intel-11.1/lib -lmpich -lpthread
> -lrdmacm
> -libverbs -libumad -lrt
>
> which mpif90
> /usr/local/packages/mvapich2/1.4/intel-11.1/bin/mpif90
>
> which mpirun
> /usr/local/packages/mvapich2/1.4/intel-11.1/bin/mpirun
>
>
>
> >
> > Do you have a /usr/include/sys/time.h file? Does it define a "timezone"
> > struct? This is not strictly a part of the "C" standard (as I understand
> > it),
> > but we haven't had reports of problems with this before. If you don't
> have
> > /usr/include/sys/time.h, does your system have a /usr/include/time.h
> > header?
> >
>
> yes, time.h exists in /usr/include/sys and it has the "timezone" struct.
>
>
> > ....dac
> >
> >
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Received on Fri Sep 17 2010 - 09:00:05 PDT
