Hi Hemant,
this look like you are mixing GNU and Intel compilers generated code? Make
sure that also the APBS and iAPBS parts are compiled with Intel compilers.
Good luck,
Robert
On Thu, Sep 16, 2010 at 05:41:33AM +0530, Hemant Kumar wrote:
> Dear Amber User/Developer,
> I am trying to get sander.APBS, following the procedure given at APBS
> webpage
> http://mccammon.ucsd.edu/iapbs/usersguide/amber-apbs.html
> While I have sucessfully compiled sander.MPI and sander using intel
> compiler.
> Error message which I am getting is following-
> _nxtsec.f:(.text+0x2f9a): undefined reference to `for_stop_core'
> _nxtsec.f:(.text+0x3022): undefined reference to `for_write_seq_fmt'
> _nxtsec.f:(.text+0x303f): undefined reference to `for_stop_core'
> ../lib/sys.a(sys.o): In function `amflsh_':
> _sys.f:(.text+0x16): undefined reference to `flush_'
> collect2: ld returned 1 exit status
> make: *** [sander.APBS] Error 1
> Is there any known issue about this compaliation?. I am using AMBER10 and
> AmberTools 1.2 on amd64 machine.
>
> With regrads,
> Hemant Kumar
> Graduate Student
> CCMT,Department of Physics
> IISC,Bangalore
> URL www.physics.iisc.ernet.in/~hemant
>
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Received on Thu Sep 16 2010 - 14:30:04 PDT
