[AMBER] Average distance between two hydrogens over a 1 ns simulation

From: Edward M. <eddjmir.gmail.com>
Date: Mon, 13 Sep 2010 07:39:17 -0400

Hello AMBER list members,

I am trying to obtain the average distance between two hydrogens over
a 1 ns simulation. I guess I need the distance at each step to be
entered into a list and then average the list.

I am using VMD but I can use any other software recommended. I assume
this is done simply by a python script or an option in VMD; I've
searched quite a bit and haven't found any answers.

Thanks,
Edward

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Received on Mon Sep 13 2010 - 05:00:05 PDT
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