Hi,
Have you applied all of the ambertools bugfixes?
If so, could you provide more details on the calculations?
Specifically number of atoms, #'frames read, existence of a box, ptraj
input etc. Thanks.
-Dan
On Sunday, September 12, 2010, Seibold, Stephen <Seibold79.stmary.edu> wrote:
>
> Hello AMBER
>
> I have been using AMBER at another University successfully. I moved my computers to another university,usm, and turned on and starting calculating trajectories with AMBER 11...no problem. However, when I went to analyze them attempting to get distances between two atoms over time I get an error "Warning in transformdistance(): Blowing array; too many frames" and "Safe-malloc: Error in alloc of -8bytes"
>
> I am sending the print out as a log.
>
> Other ptraj packages work well...for example I can get RMSDs.
>
> Please can someone give me some adivce? I am on a linux enterprise 5 OS.
>
> Thanks, Steve
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--
-------------------------
Daniel R. Roe
Postdoctoral Associate
SAS - Chemistry & Chemical Biology
610 Taylor Road
Piscataway, NJ 08854
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Received on Sun Sep 12 2010 - 13:00:03 PDT
