Hi, Hoshin Kim,
The ambmask tool (page 267 of Amber11 manual) has been helpful for me when
trying to write the right mask. The usage is just as the manual describes.
One essentially uses the program to print a pdb file that fits your mask.
HTH,
kevin
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HK
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Kevin Eduard Hauser
National Science Foundation,
LSAMP Bridge to the Doctorate Fellow
The Department of Chemistry
Stony Brook University
Stony Brook, New York 11794
Phone: (561) 635.1848
Email: 84hauser.gmail.com
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Received on Fri Sep 10 2010 - 12:00:07 PDT