Re: [AMBER] Confirmation of System equilibration ?

From: hirdesh kumar <hirdeshs8.gmail.com>
Date: Wed, 8 Sep 2010 09:45:18 +0530

Here I am providing you the script which I have used for the equilibration :
*Constant pressure constant temperature equilibration stage 2
&cntrl
 imin = 0,
 irest = 1,
 ntx=7,
 ntb=2,
 ntp = 1,
 taup = 2.0,
 cut = 10,
 ig = 209811,
 ntc = 2,
 ntf = 2,
 tempi = 300,
 temp0 = 300,
 ntt = 3,
 gamma_ln = 1.0,
 nstlim =500000, dt = 0.002,
 ntpr =2500, ntwx = 2500, ntwr = 5000
 /*

On Wed, Sep 8, 2010 at 9:41 AM, manikanthan bhavaraju <
manikanthanbhavaraju.gmail.com> wrote:

> How many ns of equilibration process have you done? What was the procedure
> (NVT,NPT or NVE) used. If you can give those details, that might help us
> to
> explain you in a better way.
>
> manikanthan
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Sep 07 2010 - 21:30:05 PDT
Custom Search