Re: [AMBER] GLYCAM residue naming

From: manoj singh <mks.amber.gmail.com>
Date: Tue, 7 Sep 2010 18:02:54 -0400

Thanks!

I run these commands as script file, and I did not know what is the net
charge of my system. That is why I have written the commands like this.

Manoj

On Tue, Sep 7, 2010 at 5:01 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:

> > addions com K+ 0
> > addions com Cl- 0
>
> Both addions cannot work: if the solute is negatively charged,
> the first will neutralize and the second will do nothing. If
> positively charged, the first will do nothing and the second
> will neutralize. If neutral, neither addions will do anything.
> This is ok unless you want both types of ions present.
>
> Bill
>
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Received on Tue Sep 07 2010 - 15:30:03 PDT
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