How much memory is available for the calculation? Nmode calculations can be
very memory intensive for biological systems. What does your input file look
like?
-Bill
On Sat, Sep 4, 2010 at 7:41 AM, Sangita Kachhap <sangita.imtech.res.in>wrote:
>
> Hello all
>
> I am doing mm_pbsa analysis using amber10 I did the snapshot generation,
> stability and binding
> energy calculation successefully but when I am doing nmode analysis getting
> following
> error :
>
> /home/sangita/amber10/exe/sander -O -i sanmin_lig.in -o sanmin_lig.2.out
> -c
> ../snapshot_ras/ras_raf_lig.crd.2 -p ../raf.prmtop -r sanmin_lig.2.restrt
> not
> running properly
>
> can anybody please suggest me what is the problem?
>
> Sangita Kachhap
> JRF
> BIC,IMTECH
> CHANDIGARH
>
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Bill Miller III
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-6715
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Received on Sat Sep 04 2010 - 05:00:04 PDT
