Hi,
Have you applied all the bug fixes?
On Wed, Sep 1, 2010 at 11:10 AM, Siddharth Rastogi <
siddharthrastogi08.gmail.com> wrote:
> Dear AMBER users,
>
> I am doing some MM-PBSA Calculation for my protein-ligand complex.
> However, I was just following the tutorial in the AMBER web page by Ross
> Walker.
> In the mean time I got the error as follows:
>
> Use of uninitialized value in concatenation (.) or string at
> /usr/apps/amber10/exe/mm_pbsa.pl line 22.
> Can't locate mm_pbsa_global.pm in .INC (.INC contains: /src/mm_pbsa
> /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi
> /usr/lib64/perl5/site_perl/5.8.7/x86_64-linux-thread-multi
> /usr/lib64/perl5/site_perl/5.8.6/x86_64-linux-thread-multi
> /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux-thread-multi
> /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl/5.8.7
> /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5
> /usr/lib/perl5/site_perl
> /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi
> /usr/lib64/perl5/vendor_perl/5.8.7/x86_64-linux-thread-multi
> /usr/lib64/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi
> /usr/lib64/perl5/vendor_perl/5.8.5/x86_64-linux-thread-multi
> /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl/5.8.7
> /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5
> /usr/lib/perl5/vendor_perl /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi
> /usr/lib/perl5/5.8.8 .) at /usr/apps/amber10/exe/mm_pbsa.pl line 23.
> BEGIN failed--compilation aborted at /usr/apps/amber10/exe/mm_pbsa.pl line
> 23.
>
>
>
> I didn't understand the full error message.
> So I tried to find it out from the AMBER mailing list.
> I got one same type of posting (
> http://archive.ambermd.org/200809/0335.html),
> but unfortunately no reply to this question.
>
> I have also this problem with both amber 9 and 10.
> Is it a problem with the installation ?
> So can any one suggest, what is going on here.
> Thank you for your suggestions.
>
>
> Thanks
>
> --
> Siddharth Rastogi
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>
--
T. Dwight McGee Jr.
Quantum Theory Project
University of Florida
Graduate Student
dwight.mcgee.gmail.com
"Problems cannot be solved at the same level of awareness that created
them."
Albert Einstein
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Received on Wed Sep 01 2010 - 09:00:03 PDT
