#  AmberTools configuration file, created with: ./configure_at gcc

###############################################################################

# (1)  Location of the installation

BINDIR=/opt/Bio/amber10/bin
LIBDIR=/opt/Bio/amber10/lib
INCDIR=/opt/Bio/amber10/include
DATDIR=/opt/Bio/amber10/dat
NABHOME=/opt/Bio/amber10/dat

###############################################################################


#  (2) If you want to search additional libraries by default, add them
#      to the FLIBS variable here.  (External libraries can also be linked into
#      NAB programs simply by including them on the command line; libraries
#      included in FLIBS are always searched.)

FLIBS= $(LIBDIR)/libsym.a $(LIBDIR)/arpack.a $(LIBDIR)/lapack.a $(LIBDIR)/blas.a $(LIBDIR)/f2c.a   

###############################################################################

#  (3)  Modify any of the following if you need to change, e.g. to use gcc
#        rather than cc, etc.

SHELL=/bin/sh

#  Set the C compiler, etc. 

#          For GNU:  CC-->gcc; LEX-->flex; YACC-->bison -y -t;
#          Note: If your lexer is "really" flex, you need to set
#          LEX=flex below.  For example, on many linux distributions,
#          /usr/bin/lex is really just a pointer to /usr/bin/flex,
#          so LEX=flex is necessary.  In general, gcc seems to need
#          flex.

CC=gcc
CXX=g++
CPLUSPLUS=g++
CFLAGS= -m64 -DBINTRAJ  $(AMBERBUILDFLAGS)
OCFLAGS=-O3 -m64 -DBINTRAJ   $(AMBERBUILDFLAGS)
NABFLAGS=
LDFLAGS=

LEX=   flex
YACC=  $(BINDIR)/yacc
AR=    ar rv
M4=    m4
RANLIB=ranlib

#  Set the C-preprocessor.  Code for a small preprocessor is in
#    uccp-1.3;  it gets installed as $(BINDIR)/ucpp;
#    this can generally be used (maybe not on 64-bit machines like altix).

CPP=    $(BINDIR)/ucpp -l

#  These variables control whether we will use compiled versions of BLAS
#  and LAPACK (which are generally slower), or whether those libraries are
#  already available (presumably in an optimized form).

LAPACK=install
BLAS=install
F2C=install

#  These variables determine whether builtin versions of certain components
#  can be used, or whether we need to compile our own versions.

UCPP=install
C9XCOMPLEX=skip

#  For Windows/cygwin, set SFX to ".exe"; for Unix/Linux leave it empty:

SFX=

#  Information about Fortran compilation:

FC= g77
FFLAGS= -O2 -fno-automatic -finit-local-zero $(LOCALFLAGS) $(AMBERBUILDFLAGS)
FREEFORMAT_FLAG= -ffree-form
LM=-lm

BUILD_SLEAP=install_sleap
XHOME= /usr/X11R6
XLIBS= -L/usr/X11R6/lib64 -L/usr/X11R6/lib
MAKE_XLEAP=install_xleap

NETCDF=netcdf.mod
NETCDFLIB=../netcdf/lib/libnetcdf.a
G77=hasG77

#  default rules for Fortran and C compilation:

.f.o:
	$(FC) -c $(FFLAGS) -o $@ $<

.c.o:
	$(CC) -c $(CFLAGS) -o $@ $<