dsarpack.f:424.3: 12 go to 11 1 dsarpack.f:199.15: go to (12,18) label 2 Warning: Label at (1) is not in the same block as the GOTO statement at (2) dsarpack.f:545.3: 18 go to 17 1 dsarpack.f:199.18: go to (12,18) label 2 Warning: Label at (1) is not in the same block as the GOTO statement at (2) ar: creating archive arpack.a ar: creating archive sys2.a ar: creating archive arpack.a ld warning: for symbol _blk_green_ tentative definition of size 74096 from pb_force.o is is smaller than the real definition of size 74088 from pb_init.o ar: creating archive arpack.a ar: creating archive sys.a ar: creating archive libpdb.a ar: creating archive arpack.a residue.c: In function ‘ResidueConnect’: residue.c:336: warning: passing argument 1 of ‘AtomBondTo’ from incompatible pointer type residue.c:336: warning: passing argument 2 of ‘AtomBondTo’ from incompatible pointer type residue.c: In function ‘ResidueMutate’: residue.c:464: warning: passing argument 1 of ‘BuildFixInternals’ from incompatible pointer type unitio.c: In function ‘zUnitIOSaveAmberParmFormat’: unitio.c:4056: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type unitio.c:4056: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type unitio.c: In function ‘zUnitIOSaveAmberParmFormat_old’: unitio.c:6073: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type unitio.c:6073: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type graphUtil.c: In function ‘GraphUtilFindAllSmallestRingsAndRingGroups’: graphUtil.c:675: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type graphUtil.c:675: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type amber.c: In function ‘uAmberReadUnitFromPrep’: amber.c:986: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type amber.c:986: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type build.c: In function ‘bBuildFlipChiralityFor’: build.c:1901: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type build.c:1901: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type build.c:1907: warning: passing argument 1 of ‘GraphUtilFindAllSmallestRings’ from incompatible pointer type build.c: In function ‘BuildInternalsForSimpleRings’: build.c:2185: warning: passing argument 1 of ‘GraphUtilFindAllSmallestRingsAndRingGroups’ from incompatible pointer type model.c: In function ‘zModelOrderAtoms’: model.c:497: warning: passing argument 1 of ‘Sift’ from incompatible pointer type pdbFile.c: In function ‘zPdbBuildCoordinatesForContainer’: pdbFile.c:1071: warning: passing argument 1 of ‘BuildFixInternals’ from incompatible pointer type pdbFile.c: In function ‘zPdbAddAtom’: pdbFile.c:1190: warning: passing argument 1 of ‘BuildInternalsForContainer’ from incompatible pointer type pdbFile.c: In function ‘writeTER’: pdbFile.c:1744: warning: initialization from incompatible pointer type tools.c: In function ‘iToolDistanceSearch’: tools.c:1648: warning: passing argument 1 of ‘SortByDouble’ from incompatible pointer type tools.c:1648: warning: passing argument 4 of ‘SortByDouble’ from incompatible pointer type tools.c: In function ‘ToolOrientPrincipleAxisAlongCoordinateAxis’: tools.c:1719: warning: passing argument 2 of ‘MathOpDiagonalize’ from incompatible pointer type WcTemplate.c: In function ‘WcxDumpEntry’: WcTemplate.c:285: warning: cast from pointer to integer of different size ar: creating archive libWcLeap.a ar: creating archive libXmu.a ar: creating archive libXpm.a 3d.c: In function ‘AllocShadowPixel’: 3d.c:366: warning: comparison is always false due to limited range of data type 3d.c:366: warning: comparison is always false due to limited range of data type 3d.c:367: warning: comparison is always false due to limited range of data type 3d.c:367: warning: comparison is always false due to limited range of data type 3d.c:368: warning: comparison is always false due to limited range of data type 3d.c:368: warning: comparison is always false due to limited range of data type Clock.c:48: warning: conflicting types for built-in function ‘round’ Toggle.c: In function ‘Notify’: Toggle.c:422: warning: cast to pointer from integer of different size ar: creating archive libXaw.a xAction.c: In function ‘zActionTwistTorsions’: xAction.c:1112: warning: passing argument 1 of ‘BuildRotateAroundBondFromTo’ from incompatible pointer type xaUnitEditor.c: In function ‘XAUEAddHydrogensAndBuildExternals’: xaUnitEditor.c:888: warning: passing argument 1 of ‘BuildInternalsForSimpleRings’ from incompatible pointer type xaUnitEditor.c: In function ‘XAUESelectedAtomsFlipChirality’: xaUnitEditor.c:1335: warning: passing argument 1 of ‘bBuildFlipChiralityFor’ from incompatible pointer type xaCommand.c: In function ‘xtcpXACInitializeDirectoryList’: xaCommand.c:840: warning: passing argument 4 of ‘qsort’ from incompatible pointer type mkdir: /Users/amber11/dat/pixmap: File exists make[2]: [install_xleap] Error 1 (ignored) bind.c: In function ‘rl_function_of_keyseq’: bind.c:704: warning: comparison is always true due to limited range of data type display.c: In function ‘rl_character_len’: display.c:1891: warning: comparison is always true due to limited range of data type fixbond.cpp:471: warning: unused parameter ‘atms’ amboff.cpp: In function ‘bool mort::read_off(std::istream&, mort::molecule_t&)’: amboff.cpp:644: warning: suggest a space before ‘;’ or explicit braces around empty body in ‘while’ statement prmtop-amoeba.cpp: In function ‘void mort::prmtop::amoeba::setup_adjust(const mort::molecule_t&, mort::excl_t&, const mort::molecule_t&)’: prmtop-amoeba.cpp:1160: warning: suggest a space before ‘;’ or explicit braces around empty body in ‘for’ statement paren.cpp:14: warning: unused parameter ‘mol’ solvate.cpp: In function ‘void mort::solvate(mort::solute_i&, const mort::molecule_t&, const mort::region_i&)’: solvate.cpp:68: warning: unused variable ‘svt_maxrad’ merge.cpp:103: warning: unused parameter ‘prev’ ar: creating archive cifparse.a /Users/amber11/bin/yacc: 3 shift/reduce conflicts. ./parse: 82 symbols. ./parse: 19 types, lastuser = 14, v_error = 14. ./parse: 9 classes. ./parse: 8 kinds. ./parse: 4 accesses. ./parse: 27 attributes. ./parse: 40 rules. ./parse: 40 used symbols. ./parse: 15 used types. ./parse: 7 used classes. ./parse: 7 used kinds. ./parse: 0 errors. ar: creating archive libsff.a ar: creating archive libpbsa.a ar: creating archive libnab.a ranlib: file: libnab.a(fftwf77.o) has no symbols ranlib: file: libnab.a(rfftwf77.o) has no symbols ranlib: file: libnab.a(fftwf77.o) has no symbols ranlib: file: libnab.a(rfftwf77.o) has no symbols symop.c: In function ‘MAT_ico’: symop.c:219: warning: passing argument 2 of ‘rot4p’ from incompatible pointer type ranlib: file: /Users/amber11/lib/libnab.a(fftwf77.o) has no symbols ranlib: file: /Users/amber11/lib/libnab.a(rfftwf77.o) has no symbols ranlib: file: /Users/amber11/lib/libnab.a(fftwf77.o) has no symbols ranlib: file: /Users/amber11/lib/libnab.a(rfftwf77.o) has no symbols ld warning: for symbol _blk_green_ tentative definition of size 74096 from /Users/amber11/lib/libnab.a(pb_force.o) is is smaller than the real definition of size 74088 from /Users/amber11/lib/libnab.a(pb_init.o) Undefined symbols: "_rfftw3d_f77_create_plan_", referenced from: ___rism_fft__fftw_make_plans in libnab.a(rism_fft.o) ___rism_fft__fftw_make_plans in libnab.a(rism_fft.o) "_rfftwnd_f77_one_real_to_complex_", referenced from: ___rism_fft__rlft3i in libnab.a(rism_fft.o) "_rfftwnd_f77_one_complex_to_real_", referenced from: ___rism_fft__rlft3i in libnab.a(rism_fft.o) "_rfftwnd_f77_destroy_plan_", referenced from: ___rism3d_c__rism3d_destroy in libnab.a(rism3d_c.o) ___rism3d_c__rism3d_destroy in libnab.a(rism3d_c.o) ___rism3d_c__reallocbox in libnab.a(rism3d_c.o) ___rism3d_c__reallocbox in libnab.a(rism3d_c.o) ld: symbol(s) not found collect2: ld returned 1 exit status cc failed! make[1]: *** [matgen] Error 1 make: *** [serial] Error 2