cd netcdf/src && make install Making install in f90 /bin/sh ../libtool --mode=compile gfortran -I../libsrc -I. -O3 -mtune=generic -msse -mfpmath=sse -c -o typeSizes.lo typeSizes.f90 gfortran -I../libsrc -I. -O3 -mtune=generic -msse -mfpmath=sse -c typeSizes.f90 -o typeSizes.o /bin/sh ../libtool --mode=compile gfortran -I../libsrc -I. -O3 -mtune=generic -msse -mfpmath=sse -c -o netcdf.lo netcdf.f90 gfortran -I../libsrc -I. -O3 -mtune=generic -msse -mfpmath=sse -c netcdf.f90 -o netcdf.o /bin/sh ../libtool --mode=link gfortran -I../libsrc -I. -O3 -mtune=generic -msse -mfpmath=sse -o libnetcdff90.la typeSizes.lo netcdf.lo mkdir .libs ar cru .libs/libnetcdff90.a typeSizes.o netcdf.o ranlib .libs/libnetcdff90.a creating libnetcdff90.la (cd .libs && rm -f libnetcdff90.la && ln -s ../libnetcdff90.la libnetcdff90.la) make[3]: Nothing to be done for `install-exec-am'. test -z "/Users/amber11/AmberTools/src/netcdf/share/man/man3" || /Users/amber11/AmberTools/src/netcdf/src/install-sh -d "/Users/amber11/AmberTools/src/netcdf/share/man/man3" /usr/bin/install -c -m 644 './netcdf_f90.3' '/Users/amber11/AmberTools/src/netcdf/share/man/man3/netcdf_f90.3' test -z "/Users/amber11/AmberTools/src/netcdf/include" || /Users/amber11/AmberTools/src/netcdf/src/install-sh -d "/Users/amber11/AmberTools/src/netcdf/include" /usr/bin/install -c -m 644 'typesizes.mod' '/Users/amber11/AmberTools/src/netcdf/include/typesizes.mod' /usr/bin/install -c -m 644 'netcdf.mod' '/Users/amber11/AmberTools/src/netcdf/include/netcdf.mod' Making install in fortran depbase=`echo fort-attio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-attio.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-attio.lo fort-attio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-attio.lo -MD -MP -MF .deps/fort-attio.Tpo -c fort-attio.c -o fort-attio.o depbase=`echo fort-control.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-control.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-control.lo fort-control.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-control.lo -MD -MP -MF .deps/fort-control.Tpo -c fort-control.c -o fort-control.o depbase=`echo fort-dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-dim.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-dim.lo fort-dim.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-dim.lo -MD -MP -MF .deps/fort-dim.Tpo -c fort-dim.c -o fort-dim.o depbase=`echo fort-genatt.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-genatt.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-genatt.lo fort-genatt.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-genatt.lo -MD -MP -MF .deps/fort-genatt.Tpo -c fort-genatt.c -o fort-genatt.o depbase=`echo fort-geninq.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-geninq.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-geninq.lo fort-geninq.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-geninq.lo -MD -MP -MF .deps/fort-geninq.Tpo -c fort-geninq.c -o fort-geninq.o depbase=`echo fort-genvar.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-genvar.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-genvar.lo fort-genvar.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-genvar.lo -MD -MP -MF .deps/fort-genvar.Tpo -c fort-genvar.c -o fort-genvar.o depbase=`echo fort-lib.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-lib.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-lib.lo fort-lib.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-lib.lo -MD -MP -MF .deps/fort-lib.Tpo -c fort-lib.c -o fort-lib.o depbase=`echo fort-misc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-misc.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-misc.lo fort-misc.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-misc.lo -MD -MP -MF .deps/fort-misc.Tpo -c fort-misc.c -o fort-misc.o depbase=`echo fort-v2compat.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-v2compat.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-v2compat.lo fort-v2compat.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-v2compat.lo -MD -MP -MF .deps/fort-v2compat.Tpo -c fort-v2compat.c -o fort-v2compat.o depbase=`echo fort-vario.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-vario.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-vario.lo fort-vario.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-vario.lo -MD -MP -MF .deps/fort-vario.Tpo -c fort-vario.c -o fort-vario.o depbase=`echo fort-var1io.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-var1io.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-var1io.lo fort-var1io.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-var1io.lo -MD -MP -MF .deps/fort-var1io.Tpo -c fort-var1io.c -o fort-var1io.o depbase=`echo fort-varaio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varaio.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-varaio.lo fort-varaio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varaio.lo -MD -MP -MF .deps/fort-varaio.Tpo -c fort-varaio.c -o fort-varaio.o depbase=`echo fort-varmio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varmio.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-varmio.lo fort-varmio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varmio.lo -MD -MP -MF .deps/fort-varmio.Tpo -c fort-varmio.c -o fort-varmio.o depbase=`echo fort-varsio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varsio.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-varsio.lo fort-varsio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varsio.lo -MD -MP -MF .deps/fort-varsio.Tpo -c fort-varsio.c -o fort-varsio.o /bin/sh ../libtool --tag=CC --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o libnetcdff.la fort-attio.lo fort-control.lo fort-dim.lo fort-genatt.lo fort-geninq.lo fort-genvar.lo fort-lib.lo fort-misc.lo fort-v2compat.lo fort-vario.lo fort-var1io.lo fort-varaio.lo fort-varmio.lo fort-varsio.lo ../f90/libnetcdff90.la mkdir .libs rm -fr .libs/libnetcdff.lax mkdir .libs/libnetcdff.lax rm -fr .libs/libnetcdff.lax/libnetcdff90.a mkdir .libs/libnetcdff.lax/libnetcdff90.a Extracting /Users/amber11/AmberTools/src/netcdf/src/fortran/../f90/.libs/libnetcdff90.a (cd .libs/libnetcdff.lax/libnetcdff90.a && ar x /Users/amber11/AmberTools/src/netcdf/src/fortran/../f90/.libs/libnetcdff90.a) ar cru .libs/libnetcdff.a fort-attio.o fort-control.o fort-dim.o fort-genatt.o fort-geninq.o fort-genvar.o fort-lib.o fort-misc.o fort-v2compat.o fort-vario.o fort-var1io.o fort-varaio.o fort-varmio.o fort-varsio.o .libs/libnetcdff.lax/libnetcdff90.a/netcdf.o .libs/libnetcdff.lax/libnetcdff90.a/typeSizes.o ranlib .libs/libnetcdff.a rm -fr .libs/libnetcdff.lax creating libnetcdff.la (cd .libs && rm -f libnetcdff.la && ln -s ../libnetcdff.la libnetcdff.la) cd .. && /bin/sh ./config.status fortran/nfconfig1.inc config.status: creating fortran/nfconfig1.inc test -z "/Users/amber11/AmberTools/src/netcdf/lib" || /Users/amber11/AmberTools/src/netcdf/src/install-sh -d "/Users/amber11/AmberTools/src/netcdf/lib" test -z "/Users/amber11/AmberTools/src/netcdf/include" || /Users/amber11/AmberTools/src/netcdf/src/install-sh -d "/Users/amber11/AmberTools/src/netcdf/include" /usr/bin/install -c -m 644 'netcdf.inc' '/Users/amber11/AmberTools/src/netcdf/include/netcdf.inc' test -z "/Users/amber11/AmberTools/src/netcdf/share/man/man3" || /Users/amber11/AmberTools/src/netcdf/src/install-sh -d "/Users/amber11/AmberTools/src/netcdf/share/man/man3" /usr/bin/install -c -m 644 './netcdf_f77.3' '/Users/amber11/AmberTools/src/netcdf/share/man/man3/netcdf_f77.3' Making install in libsrc depbase=`echo attr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT attr.lo -MD -MP -MF "$depbase.Tpo" -c -o attr.lo attr.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT attr.lo -MD -MP -MF .deps/attr.Tpo -c attr.c -o attr.o depbase=`echo ncx.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT ncx.lo -MD -MP -MF "$depbase.Tpo" -c -o ncx.lo ncx.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT ncx.lo -MD -MP -MF .deps/ncx.Tpo -c ncx.c -o ncx.o depbase=`echo putget.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT putget.lo -MD -MP -MF "$depbase.Tpo" -c -o putget.lo putget.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT putget.lo -MD -MP -MF .deps/putget.Tpo -c putget.c -o putget.o depbase=`echo dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT dim.lo -MD -MP -MF "$depbase.Tpo" -c -o dim.lo dim.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT dim.lo -MD -MP -MF .deps/dim.Tpo -c dim.c -o dim.o depbase=`echo error.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT error.lo -MD -MP -MF "$depbase.Tpo" -c -o error.lo error.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -o error.o depbase=`echo libvers.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT libvers.lo -MD -MP -MF "$depbase.Tpo" -c -o libvers.lo libvers.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT libvers.lo -MD -MP -MF .deps/libvers.Tpo -c libvers.c -o libvers.o depbase=`echo nc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT nc.lo -MD -MP -MF "$depbase.Tpo" -c -o nc.lo nc.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT nc.lo -MD -MP -MF .deps/nc.Tpo -c nc.c -o nc.o depbase=`echo string.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT string.lo -MD -MP -MF "$depbase.Tpo" -c -o string.lo string.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT string.lo -MD -MP -MF .deps/string.Tpo -c string.c -o string.o depbase=`echo v1hpg.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT v1hpg.lo -MD -MP -MF "$depbase.Tpo" -c -o v1hpg.lo v1hpg.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT v1hpg.lo -MD -MP -MF .deps/v1hpg.Tpo -c v1hpg.c -o v1hpg.o depbase=`echo var.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT var.lo -MD -MP -MF "$depbase.Tpo" -c -o var.lo var.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT var.lo -MD -MP -MF .deps/var.Tpo -c var.c -o var.o depbase=`echo posixio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT posixio.lo -MD -MP -MF "$depbase.Tpo" -c -o posixio.lo posixio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT posixio.lo -MD -MP -MF .deps/posixio.Tpo -c posixio.c -o posixio.o depbase=`echo v2i.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT v2i.lo -MD -MP -MF "$depbase.Tpo" -c -o v2i.lo v2i.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT v2i.lo -MD -MP -MF .deps/v2i.Tpo -c v2i.c -o v2i.o /bin/sh ../libtool --tag=CC --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o libnetcdf2.la v2i.lo mkdir .libs ar cru .libs/libnetcdf2.a v2i.o ranlib .libs/libnetcdf2.a creating libnetcdf2.la (cd .libs && rm -f libnetcdf2.la && ln -s ../libnetcdf2.la libnetcdf2.la) /bin/sh ../libtool --tag=CC --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o libnetcdf.la -rpath /Users/amber11/AmberTools/src/netcdf/lib -version-info 4:0:0 -no-undefined attr.lo ncx.lo putget.lo dim.lo error.lo libvers.lo nc.lo string.lo v1hpg.lo var.lo posixio.lo libnetcdf2.la ../fortran/libnetcdff.la rm -fr .libs/libnetcdf.lax mkdir .libs/libnetcdf.lax rm -fr .libs/libnetcdf.lax/libnetcdf2.a mkdir .libs/libnetcdf.lax/libnetcdf2.a Extracting /Users/amber11/AmberTools/src/netcdf/src/libsrc/./.libs/libnetcdf2.a (cd .libs/libnetcdf.lax/libnetcdf2.a && ar x /Users/amber11/AmberTools/src/netcdf/src/libsrc/./.libs/libnetcdf2.a) rm -fr .libs/libnetcdf.lax/libnetcdff.a mkdir .libs/libnetcdf.lax/libnetcdff.a Extracting /Users/amber11/AmberTools/src/netcdf/src/libsrc/../fortran/.libs/libnetcdff.a (cd .libs/libnetcdf.lax/libnetcdff.a && ar x /Users/amber11/AmberTools/src/netcdf/src/libsrc/../fortran/.libs/libnetcdff.a) ar cru .libs/libnetcdf.a attr.o ncx.o putget.o dim.o error.o libvers.o nc.o string.o v1hpg.o var.o posixio.o .libs/libnetcdf.lax/libnetcdf2.a/v2i.o .libs/libnetcdf.lax/libnetcdff.a/fort-attio.o .libs/libnetcdf.lax/libnetcdff.a/fort-control.o .libs/libnetcdf.lax/libnetcdff.a/fort-dim.o .libs/libnetcdf.lax/libnetcdff.a/fort-genatt.o .libs/libnetcdf.lax/libnetcdff.a/fort-geninq.o .libs/libnetcdf.lax/libnetcdff.a/fort-genvar.o .libs/libnetcdf.lax/libnetcdff.a/fort-lib.o .libs/libnetcdf.lax/libnetcdff.a/fort-misc.o .libs/libnetcdf.lax/libnetcdff.a/fort-v2compat.o .libs/libnetcdf.lax/libnetcdff.a/fort-var1io.o .libs/libnetcdf.lax/libnetcdff.a/fort-varaio.o .libs/libnetcdf.lax/libnetcdff.a/fort-vario.o .libs/libnetcdf.lax/libnetcdff.a/fort-varmio.o .libs/libnetcdf.lax/libnetcdff.a/fort-varsio.o .libs/libnetcdf.lax/libnetcdff.a/netcdf.o .libs/libnetcdf.lax/libnetcdff.a/typeSizes.o ranlib .libs/libnetcdf.a rm -fr .libs/libnetcdf.lax creating libnetcdf.la (cd .libs && rm -f libnetcdf.la && ln -s ../libnetcdf.la libnetcdf.la) test -z "/Users/amber11/AmberTools/src/netcdf/lib" || /Users/amber11/AmberTools/src/netcdf/src/install-sh -d "/Users/amber11/AmberTools/src/netcdf/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c 'libnetcdf.la' '/Users/amber11/AmberTools/src/netcdf/lib/libnetcdf.la' /usr/bin/install -c .libs/libnetcdf.lai /Users/amber11/AmberTools/src/netcdf/lib/libnetcdf.la /usr/bin/install -c .libs/libnetcdf.a /Users/amber11/AmberTools/src/netcdf/lib/libnetcdf.a chmod 644 /Users/amber11/AmberTools/src/netcdf/lib/libnetcdf.a ranlib /Users/amber11/AmberTools/src/netcdf/lib/libnetcdf.a ---------------------------------------------------------------------- Libraries have been installed in: /Users/amber11/AmberTools/src/netcdf/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable during execution See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/Users/amber11/AmberTools/src/netcdf/include" || /Users/amber11/AmberTools/src/netcdf/src/install-sh -d "/Users/amber11/AmberTools/src/netcdf/include" /usr/bin/install -c -m 644 'netcdf.h' '/Users/amber11/AmberTools/src/netcdf/include/netcdf.h' test -z "/Users/amber11/AmberTools/src/netcdf/share/man/man3" || /Users/amber11/AmberTools/src/netcdf/src/install-sh -d "/Users/amber11/AmberTools/src/netcdf/share/man/man3" /usr/bin/install -c -m 644 './netcdf.3' '/Users/amber11/AmberTools/src/netcdf/share/man/man3/netcdf.3' Making install in nctest make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. Making install in ncgen depbase=`echo main.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT main.o -MD -MP -MF "$depbase.Tpo" -c -o main.o main.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo load.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT load.o -MD -MP -MF "$depbase.Tpo" -c -o load.o load.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo ncgentab.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT ncgentab.o -MD -MP -MF "$depbase.Tpo" -c -o ncgentab.o ncgentab.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo escapes.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT escapes.o -MD -MP -MF "$depbase.Tpo" -c -o escapes.o escapes.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo getfill.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT getfill.o -MD -MP -MF "$depbase.Tpo" -c -o getfill.o getfill.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo init.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT init.o -MD -MP -MF "$depbase.Tpo" -c -o init.o init.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo genlib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT genlib.o -MD -MP -MF "$depbase.Tpo" -c -o genlib.o genlib.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi /bin/sh ../libtool --tag=CC --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o ncgen main.o load.o ncgentab.o escapes.o getfill.o init.o genlib.o ../libsrc/libnetcdf.la mkdir .libs gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o ncgen main.o load.o ncgentab.o escapes.o getfill.o init.o genlib.o ../libsrc/.libs/libnetcdf.a test -z "/Users/amber11/AmberTools/src/netcdf/bin" || /Users/amber11/AmberTools/src/netcdf/src/install-sh -d "/Users/amber11/AmberTools/src/netcdf/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'ncgen' '/Users/amber11/AmberTools/src/netcdf/bin/ncgen' /usr/bin/install -c ncgen /Users/amber11/AmberTools/src/netcdf/bin/ncgen test -z "/Users/amber11/AmberTools/src/netcdf/share/man/man1" || /Users/amber11/AmberTools/src/netcdf/src/install-sh -d "/Users/amber11/AmberTools/src/netcdf/share/man/man1" /usr/bin/install -c -m 644 './ncgen.1' '/Users/amber11/AmberTools/src/netcdf/share/man/man1/ncgen.1' Making install in ncdump depbase=`echo ncdump.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT ncdump.o -MD -MP -MF "$depbase.Tpo" -c -o ncdump.o ncdump.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo vardata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT vardata.o -MD -MP -MF "$depbase.Tpo" -c -o vardata.o vardata.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo dumplib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT dumplib.o -MD -MP -MF "$depbase.Tpo" -c -o dumplib.o dumplib.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi /bin/sh ../libtool --tag=CC --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o ncdump ncdump.o vardata.o dumplib.o -lm ../libsrc/libnetcdf.la mkdir .libs gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o ncdump ncdump.o vardata.o dumplib.o -lm ../libsrc/.libs/libnetcdf.a test -z "/Users/amber11/AmberTools/src/netcdf/bin" || /Users/amber11/AmberTools/src/netcdf/src/install-sh -d "/Users/amber11/AmberTools/src/netcdf/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'ncdump' '/Users/amber11/AmberTools/src/netcdf/bin/ncdump' /usr/bin/install -c ncdump /Users/amber11/AmberTools/src/netcdf/bin/ncdump test -z "/Users/amber11/AmberTools/src/netcdf/share/man/man1" || /Users/amber11/AmberTools/src/netcdf/src/install-sh -d "/Users/amber11/AmberTools/src/netcdf/share/man/man1" /usr/bin/install -c -m 644 './ncdump.1' '/Users/amber11/AmberTools/src/netcdf/share/man/man1/ncdump.1' Making install in nf_test make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. Making install in nc_test make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. Making install in examples Making install in C make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in CDL make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in F77 make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in F90 make install-am make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[3]: Nothing to be done for `install-exec-am'. make install-data-hook +-------------------------------------------------------------+ | CAUTION: | | | | If you have not already run "make check", then we strongly | | recommend you do so. It does not take very long. | | | | Before using netCDF to store important data, test your | | build with "make check". | | | | NetCDF is tested nightly on many platforms at Unidata | | but your platform is probably different in some ways. | | | | If any tests fail, please see the netCDF web site: | | http://www.unidata.ucar.edu/software/netcdf/ | | | | NetCDF is developed and maintained at the Unidata Program | | Center. Unidata provides a broad array of data and software | | tools for use in geoscience education and research. | | http://www.unidata.ucar.edu | +-------------------------------------------------------------+ Starting installation of AmberTools, version 1.4 serial at Mon Jul 12 22:37:41 CEST 2010. (cd ucpp-1.3 && make install ) gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE mem.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE nhash.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE cpp.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE lexer.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE assert.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE macro.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE eval.c gcc -o ucpp mem.o nhash.o cpp.o lexer.o assert.o macro.o eval.o mv ucpp /Users/amber11/bin (cd byacc && make install ) gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o closure.o closure.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o error.o error.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o lalr.o lalr.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o lr0.o lr0.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o main.o main.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o mkpar.o mkpar.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o output.o output.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o reader.o reader.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o skeleton.o skeleton.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o symtab.o symtab.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o verbose.o verbose.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o warshall.o warshall.c mv yacc /Users/amber11/bin (cd arpack && make install ); gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o ivout.o ivout.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dvout.o dvout.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dgetv0.o dgetv0.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dlaqrb.o dlaqrb.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dnaitr.o dnaitr.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dnapps.o dnapps.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dnaup2.o dnaup2.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dnaupd.o dnaupd.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dnconv.o dnconv.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dneigh.o dneigh.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dmout.o dmout.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dneupd.o dneupd.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dngets.o dngets.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dsaitr.o dsaitr.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dsapps.o dsapps.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dsaup2.o dsaup2.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dsaupd.o dsaupd.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dsconv.o dsconv.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dseigt.o dseigt.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dsesrt.o dsesrt.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dseupd.o dseupd.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dsgets.o dsgets.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dsortc.o dsortc.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dsortr.o dsortr.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dstatn.o dstatn.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dstats.o dstats.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dstqrb.o dstqrb.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -o dsarpack.o dsarpack.f gcc -c -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o wallclock.o wallclock.c ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /Users/amber11/lib (cd lapack && make skip ) skipping compilation of LAPACK (cd blas && make skip ) skipping compilation of BLAS (cd c9x-complex && make skip ) using built-in (C99) complex.h functionality (cd etc && make install ) cpp -traditional -P -DBINTRAJ ambpdb.f90 > _ambpdb.f90 gfortran -c -O0 -ffree-form -o ambpdb.o _ambpdb.f90 cpp -traditional -P -DBINTRAJ forFIRSTtype.f90 > _forFIRSTtype.f90 gfortran -c -O0 -ffree-form -o forFIRSTtype.o _forFIRSTtype.f90 cpp -traditional -P -DBINTRAJ forFIRSTbond.f90 > _forFIRSTbond.f90 gfortran -c -O0 -ffree-form -o forFIRSTbond.o _forFIRSTbond.f90 cpp -traditional -P -DBINTRAJ forFIRSThbond.f90 > _forFIRSThbond.f90 gfortran -c -O0 -ffree-form -o forFIRSThbond.o _forFIRSThbond.f90 cpp -traditional -P -DBINTRAJ forFIRSTteth.f90 > _forFIRSTteth.f90 gfortran -c -O0 -ffree-form -o forFIRSTteth.o _forFIRSTteth.f90 cpp -traditional -P -DBINTRAJ forFIRSToutp.f90 > _forFIRSToutp.f90 gfortran -c -O0 -ffree-form -o forFIRSToutp.o _forFIRSToutp.f90 cpp -traditional -P -DBINTRAJ forFIRSTsugar.f90 > _forFIRSTsugar.f90 gfortran -c -O0 -ffree-form -o forFIRSTsugar.o _forFIRSTsugar.f90 cd ../lib && make sys2.a cpp -traditional -P -DBINTRAJ sys.f > _sys.f gfortran -c -O0 -o sys.o _sys.f gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o wallclock.o wallclock.c cpp -traditional -P -DBINTRAJ random.f > _random.f gfortran -c -O0 -ffree-form -o random.o _random.f cpp -traditional -P -DBINTRAJ veclib.f > _veclib.f gfortran -c -O0 -ffree-form -o veclib.o _veclib.f cpp -traditional -P -DBINTRAJ amopen.f > _amopen.f gfortran -c -O0 -o amopen.o _amopen.f cpp -traditional -P -DBINTRAJ mexit.f > _mexit.f gfortran -c -O0 -o mexit.o _mexit.f cpp -traditional -P -DBINTRAJ nxtsec.f > _nxtsec.f gfortran -c -O0 -o nxtsec.o _nxtsec.f cpp -traditional -P -DBINTRAJ rgroup.f > _rgroup.f gfortran -c -O0 -o rgroup.o _rgroup.f cpp -traditional -P -DBINTRAJ rfree.f > _rfree.f gfortran -c -O0 -o rfree.o _rfree.f cpp -traditional -P -DBINTRAJ matinv.f > _matinv.f gfortran -c -O0 -o matinv.o _matinv.f ar rv sys2.a sys.o wallclock.o random.o veclib.o amopen.o mexit.o nxtsec.o rgroup.o rfree.o matinv.o a - sys.o a - wallclock.o a - random.o a - veclib.o a - amopen.o a - mexit.o a - nxtsec.o a - rgroup.o a - rfree.o a - matinv.o ranlib sys2.a gfortran -o ambpdb ambpdb.o forFIRSTtype.o forFIRSTbond.o forFIRSThbond.o forFIRSTteth.o forFIRSToutp.o forFIRSTsugar.o ../lib/sys2.a gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o elsize.o elsize.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o elsize elsize.o -lm gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o molsurf.o molsurf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o molsurf molsurf.o -lm cpp -traditional -P -DBINTRAJ add_pdb.f90 > _add_pdb.f90 gfortran -c -O0 -ffree-form -o add_pdb.o _add_pdb.f90 gfortran -o add_pdb add_pdb.o ../lib/sys2.a cpp -traditional -P -DBINTRAJ lapack.f > _lapack.f gfortran -c -O0 -o lapack.o _lapack.f cpp -traditional -P -DBINTRAJ resp.f > _resp.f gfortran -c -O0 -o resp.o _resp.f gfortran lapack.o resp.o -o resp /bin/mv ambpdb elsize molsurf add_pdb resp /Users/amber11/bin /bin/cp calcpka.pl cpinutil.pl CPin.pm lmodprmtop /Users/amber11/bin (cd chamber && make install ) make chamber cpp -traditional -P -DBINTRAJ psf_strings.f > _psf_strings.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o psf_strings.o _psf_strings.f cpp -traditional -P -DBINTRAJ cmap.f > _cmap.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o cmap.o _cmap.f cpp -traditional -P -DBINTRAJ psfprm.f > _psfprm.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o psfprm.o _psfprm.f cpp -traditional -P -DBINTRAJ molnt.f > _molnt.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o molnt.o _molnt.f cpp -traditional -P -DBINTRAJ write_prmtop.f > _write_prmtop.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o write_prmtop.o _write_prmtop.f cpp -traditional -P -DBINTRAJ main.f > _main.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o main.o _main.f cpp -traditional -P -DBINTRAJ gbradii.f > _gbradii.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o gbradii.o _gbradii.f cpp -traditional -P -DBINTRAJ sort.f > _sort.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o sort.o _sort.f cpp -traditional -P -DBINTRAJ mkexcl.f > _mkexcl.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o mkexcl.o _mkexcl.f gfortran -o chamber main.o psfprm.o psf_strings.o write_prmtop.o gbradii.o sort.o mkexcl.o cmap.o molnt.o mv chamber /Users/amber11/bin (cd pbsa && make install ) cpp -traditional -P -DBINTRAJ -DPBSA dsvdc.f > _dsvdc.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o dsvdc.o _dsvdc.f cpp -traditional -P -DBINTRAJ -DPBSA egb.f > _egb.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o egb.o _egb.f cpp -traditional -P -DBINTRAJ -DPBSA timer.f > _timer.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o timer.o _timer.f cpp -traditional -P -DBINTRAJ -DPBSA decomp.f > _decomp.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o decomp.o _decomp.f cpp -traditional -P -DBINTRAJ -DPBSA pbsa.f > _pbsa.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o pbsa.o _pbsa.f cpp -traditional -P -DBINTRAJ -DPBSA sa_driver.f > _sa_driver.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o sa_driver.o _sa_driver.f cpp -traditional -P -DBINTRAJ -DPBSA pb_nlsolver.f > _pb_nlsolver.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o pb_nlsolver.o _pb_nlsolver.f cpp -traditional -P -DBINTRAJ -DPBSA pb_lsolver.f > _pb_lsolver.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o pb_lsolver.o _pb_lsolver.f cpp -traditional -P -DBINTRAJ -DPBSA pb_force.f > _pb_force.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o pb_force.o _pb_force.f cpp -traditional -P -DBINTRAJ -DPBSA np_force.f > _np_force.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o np_force.o _np_force.f cpp -traditional -P -DBINTRAJ -DPBSA pb_read.f > _pb_read.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o pb_read.o _pb_read.f cpp -traditional -P -DBINTRAJ -DPBSA pb_write.f > _pb_write.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o pb_write.o _pb_write.f cpp -traditional -P -DBINTRAJ -DPBSA getcoor.f > _getcoor.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o getcoor.o _getcoor.f cpp -traditional -P -DBINTRAJ -DPBSA runmd.f > _runmd.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o runmd.o _runmd.f cpp -traditional -P -DBINTRAJ -DPBSA runmin.f > _runmin.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o runmin.o _runmin.f cpp -traditional -P -DBINTRAJ -DPBSA force.f > _force.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o force.o _force.f cpp -traditional -P -DBINTRAJ -DPBSA pb_init.f > _pb_init.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o pb_init.o _pb_init.f cpp -traditional -P -DBINTRAJ -DPBSA pb_exmol.f > _pb_exmol.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o pb_exmol.o _pb_exmol.f cpp -traditional -P -DBINTRAJ -DPBSA pb_mpfrc.f > _pb_mpfrc.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o pb_mpfrc.o _pb_mpfrc.f cpp -traditional -P -DBINTRAJ -DPBSA pb_direct.f > _pb_direct.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o pb_direct.o _pb_direct.f cpp -traditional -P -DBINTRAJ -DPBSA pb_list.f > _pb_list.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o pb_list.o _pb_list.f cpp -traditional -P -DBINTRAJ -DPBSA ene.f > _ene.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o ene.o _ene.f cpp -traditional -P -DBINTRAJ -DPBSA locmem.f > _locmem.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o locmem.o _locmem.f cpp -traditional -P -DBINTRAJ -DPBSA myopen.f > _myopen.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o myopen.o _myopen.f cpp -traditional -P -DBINTRAJ -DPBSA rdparm.f > _rdparm.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o rdparm.o _rdparm.f cpp -traditional -P -DBINTRAJ -DPBSA rgroup.f > _rgroup.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o rgroup.o _rgroup.f cpp -traditional -P -DBINTRAJ -DPBSA rfree.f > _rfree.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o rfree.o _rfree.f cpp -traditional -P -DBINTRAJ -DPBSA debug.f > _debug.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o debug.o _debug.f cd ../lib && make nxtsec.o make[2]: `nxtsec.o' is up to date. cd ../lapack && make skip skipping compilation of LAPACK cd ../blas && make skip skipping compilation of BLAS cd ../arpack && make install ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /Users/amber11/lib gfortran -o pbsa dsvdc.o pbsa.o pb_read.o pb_write.o getcoor.o runmd.o runmin.o force.o pb_init.o sa_driver.o np_force.o pb_force.o pb_nlsolver.o pb_exmol.o pb_mpfrc.o pb_direct.o pb_list.o timer.o egb.o ene.o locmem.o myopen.o rdparm.o pb_lsolver.o decomp.o rgroup.o rfree.o debug.o ../lib/nxtsec.o /Users/amber11/lib/arpack.a -framework Accelerate /bin/mv pbsa /Users/amber11/bin (cd rism && make install ) cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ constants.f > _constants.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o constants.o _constants.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ quaternion.f > _quaternion.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o quaternion.o _quaternion.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism_util.f > _rism_util.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o rism_util.o _rism_util.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism1d.f > _rism1d.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o rism1d.o _rism1d.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ output.f > _output.f gfortran -c -O0 -ffree-form -o output.o _output.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ pubfft.f > _pubfft.f gfortran -c -O0 -ffree-form -o pubfft.o _pubfft.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ erfcfun.f > _erfcfun.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o erfcfun.o _erfcfun.f gfortran -o rism1d rism1d.o output.o rism_util.o quaternion.o pubfft.o erfcfun.o constants.o ../lib/amopen.o ../lib/mexit.o ../lib/nxtsec.o ../lib/sys.o \ /Users/amber11/lib/arpack.a -framework Accelerate /bin/mv rism1d /Users/amber11/bin (cd antechamber && make install ) gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o am1bcc.o am1bcc.c gcc am1bcc.o -lm -o am1bcc gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o acdoctor.o acdoctor.c gcc acdoctor.o -lm -o acdoctor gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o antechamber.o antechamber.c gcc antechamber.o -lm -o antechamber gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o atomtype.o atomtype.c gcc atomtype.o -lm -o atomtype gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o bondtype.o bondtype.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ncsu-penalties.o ncsu-penalties.c gcc ncsu-penalties.o bondtype.o -lm -o bondtype gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o charmmgen.o charmmgen.c gcc charmmgen.o -lm -o charmmgen gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o crdgrow.o crdgrow.c gcc crdgrow.o -lm -o crdgrow gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o database.o database.c gcc database.o -lm -o database gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o espgen.o espgen.c gcc espgen.o -o espgen gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parmcal.o parmcal.c gcc parmcal.o -lm -o parmcal gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parmchk.o parmchk.c gcc parmchk.o -lm -o parmchk gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o prepgen.o prepgen.c gcc prepgen.o -lm -o prepgen gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o residuegen.o residuegen.c gcc residuegen.o -lm -o residuegen gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o respgen.o respgen.c gcc respgen.o -lm -o respgen gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o translate.o translate.c gcc translate.o -lm -o translate gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o top2ff.o top2ff.c gcc top2ff.o -lm -o top2ff gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o top2mol2.o top2mol2.c gcc top2mol2.o -lm -o top2mol2 mv -f am1bcc acdoctor antechamber atomtype bondtype charmmgen crdgrow database espgen parmcal parmchk prepgen residuegen respgen translate top2ff top2mol2 /Users/amber11/bin (cd sqm && make install ) cpp -traditional -P -DBINTRAJ constants.f > _constants.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o constants.o _constants.f cpp -traditional -P -DBINTRAJ findmask.f > _findmask.f gfortran -c -O0 -ffree-form -o findmask.o _findmask.f cpp -traditional -P -DBINTRAJ qmmm_qmtheorymodule.f > _qmmm_qmtheorymodule.f gfortran -c -O0 -ffree-form -o qmmm_qmtheorymodule.o _qmmm_qmtheorymodule.f cpp -traditional -P -DBINTRAJ qmmm_module.f > _qmmm_module.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qmmm_module.o _qmmm_module.f cpp -traditional -P -DBINTRAJ qm2_pm6_hof_module.f > _qm2_pm6_hof_module.f gfortran -c -O0 -ffree-form -o qm2_pm6_hof_module.o _qm2_pm6_hof_module.f cpp -traditional -P -DBINTRAJ sqm.f > _sqm.f gfortran -c -O0 -ffree-form -o sqm.o _sqm.f cpp -traditional -P -DBINTRAJ xmin.f > _xmin.f gfortran -c -O0 -ffree-form -o xmin.o _xmin.f gcc -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSQM -c -o xminC.o ../sff/xminC.c cpp -traditional -P -DBINTRAJ amopen.f > _amopen.f gfortran -c -O0 -ffree-form -o amopen.o _amopen.f cpp -traditional -P -DBINTRAJ mexit.f > _mexit.f gfortran -c -O0 -ffree-form -o mexit.o _mexit.f cpp -traditional -P -DBINTRAJ assert.f > _assert.f gfortran -c -O0 -ffree-form -o assert.o _assert.f cpp -traditional -P -DBINTRAJ timer_dummy.f > _timer_dummy.f gfortran -c -O0 -ffree-form -o timer_dummy.o _timer_dummy.f cpp -traditional -P -DBINTRAJ nmlsrc.f > _nmlsrc.f gfortran -c -O0 -ffree-form -o nmlsrc.o _nmlsrc.f cpp -traditional -P -DBINTRAJ -DSQM qm_print_info.f > _qm_print_info.SQM.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm_print_info.SQM.o _qm_print_info.SQM.f cpp -traditional -P -DBINTRAJ -DSQM qm2_energy.f > _qm2_energy.SQM.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_energy.SQM.o _qm2_energy.SQM.f cpp -traditional -P -DBINTRAJ -DSQM qm2_read_nm_and_alloc.f > _qm2_read_nm_and_alloc.SQM.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_read_nm_and_alloc.SQM.o _qm2_read_nm_and_alloc.SQM.f cpp -traditional -P -DBINTRAJ qm2_iterator_mod.f > _qm2_iterator_mod.f gfortran -c -O0 -ffree-form -o qm2_iterator_mod.o _qm2_iterator_mod.f cpp -traditional -P -DBINTRAJ -DSQM qm2_scf.f > _qm2_scf.SQM.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_scf.SQM.o _qm2_scf.SQM.f cpp -traditional -P -DBINTRAJ qm2_dftb_module.f > _qm2_dftb_module.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_module.o _qm2_dftb_module.f cpp -traditional -P -DBINTRAJ -DSQM qm2_dftb_scf.f > _qm2_dftb_scf.SQM.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_scf.SQM.o _qm2_dftb_scf.SQM.f cpp -traditional -P -DBINTRAJ qm2_allocate_e_repul.f > _qm2_allocate_e_repul.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_allocate_e_repul.o _qm2_allocate_e_repul.f cpp -traditional -P -DBINTRAJ qm2_calc_charges.f > _qm2_calc_charges.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_calc_charges.o _qm2_calc_charges.f cpp -traditional -P -DBINTRAJ qm2_calc_rij_and_eqns.f > _qm2_calc_rij_and_eqns.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_calc_rij_and_eqns.o _qm2_calc_rij_and_eqns.f cpp -traditional -P -DBINTRAJ qm2_dihed.f > _qm2_dihed.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dihed.o _qm2_dihed.f cpp -traditional -P -DBINTRAJ qm2_fock.f > _qm2_fock.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_fock.o _qm2_fock.f cpp -traditional -P -DBINTRAJ qm2_get_qm_forces.f > _qm2_get_qm_forces.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_get_qm_forces.o _qm2_get_qm_forces.f cpp -traditional -P -DBINTRAJ qm2_get_qmmm_forces.f > _qm2_get_qmmm_forces.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_get_qmmm_forces.o _qm2_get_qmmm_forces.f cpp -traditional -P -DBINTRAJ qm2_h1elec.f > _qm2_h1elec.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_h1elec.o _qm2_h1elec.f cpp -traditional -P -DBINTRAJ qm2_hcore_qmqm.f > _qm2_hcore_qmqm.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_hcore_qmqm.o _qm2_hcore_qmqm.f cpp -traditional -P -DBINTRAJ qm2_hcore_qmmm.f > _qm2_hcore_qmmm.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_hcore_qmmm.o _qm2_hcore_qmmm.f cpp -traditional -P -DBINTRAJ qm2_identify_peptide_links.f > _qm2_identify_peptide_links.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_identify_peptide_links.o _qm2_identify_peptide_links.f cpp -traditional -P -DBINTRAJ qm2_load_params_and_allocate.f > _qm2_load_params_and_allocate.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_load_params_and_allocate.o _qm2_load_params_and_allocate.f cpp -traditional -P -DBINTRAJ qm2_repp.f > _qm2_repp.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_repp.o _qm2_repp.f cpp -traditional -P -DBINTRAJ qm2_rotate_qmqm.f > _qm2_rotate_qmqm.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_rotate_qmqm.o _qm2_rotate_qmqm.f cpp -traditional -P -DBINTRAJ qm2_core_core_repulsion.f > _qm2_core_core_repulsion.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_core_core_repulsion.o _qm2_core_core_repulsion.f cpp -traditional -P -DBINTRAJ qm2_core_core_repulsion_dxyz.f > _qm2_core_core_repulsion_dxyz.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_core_core_repulsion_dxyz.o _qm2_core_core_repulsion_dxyz.f cpp -traditional -P -DBINTRAJ qm2_setup_orb_exp.f > _qm2_setup_orb_exp.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_setup_orb_exp.o _qm2_setup_orb_exp.f cpp -traditional -P -DBINTRAJ qm2_smallest_number.f > _qm2_smallest_number.f gfortran -c -O0 -ffree-form -o qm2_smallest_number.o _qm2_smallest_number.f cpp -traditional -P -DBINTRAJ qm2_fock_predict.f > _qm2_fock_predict.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_fock_predict.o _qm2_fock_predict.f cpp -traditional -P -DBINTRAJ qm_gb.f > _qm_gb.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm_gb.o _qm_gb.f cpp -traditional -P -DBINTRAJ qm_zero_charges.f > _qm_zero_charges.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm_zero_charges.o _qm_zero_charges.f cpp -traditional -P -DBINTRAJ qm_assign_atom_types.f > _qm_assign_atom_types.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm_assign_atom_types.o _qm_assign_atom_types.f cpp -traditional -P -DBINTRAJ qm_link_atoms.f > _qm_link_atoms.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm_link_atoms.o _qm_link_atoms.f cpp -traditional -P -DBINTRAJ qm2_print_charges.f > _qm2_print_charges.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_print_charges.o _qm2_print_charges.f cpp -traditional -P -DBINTRAJ qm2_dftb_broyden.f > _qm2_dftb_broyden.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_broyden.o _qm2_dftb_broyden.f cpp -traditional -P -DBINTRAJ qm2_dftb_dispersion_egr.f > _qm2_dftb_dispersion_egr.f gfortran -c -O0 -ffree-form -o qm2_dftb_dispersion_egr.o _qm2_dftb_dispersion_egr.f cpp -traditional -P -DBINTRAJ qm2_dftb_dispersion_params.f > _qm2_dftb_dispersion_params.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_dispersion_params.o _qm2_dftb_dispersion_params.f cpp -traditional -P -DBINTRAJ qm2_dftb_dispersionread.f > _qm2_dftb_dispersionread.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_dispersionread.o _qm2_dftb_dispersionread.f cpp -traditional -P -DBINTRAJ qm2_dftb_energy.f > _qm2_dftb_energy.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_energy.o _qm2_dftb_energy.f cpp -traditional -P -DBINTRAJ qm2_dftb_ewevge.f > _qm2_dftb_ewevge.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_ewevge.o _qm2_dftb_ewevge.f cpp -traditional -P -DBINTRAJ qm2_dftb_externalshift.f > _qm2_dftb_externalshift.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_externalshift.o _qm2_dftb_externalshift.f cpp -traditional -P -DBINTRAJ qm2_dftb_fermi.f > _qm2_dftb_fermi.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_fermi.o _qm2_dftb_fermi.f cpp -traditional -P -DBINTRAJ qm2_dftb_get_qm_forces.f > _qm2_dftb_get_qm_forces.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_get_qm_forces.o _qm2_dftb_get_qm_forces.f cpp -traditional -P -DBINTRAJ qm2_dftb_gamma.f > _qm2_dftb_gamma.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_gamma.o _qm2_dftb_gamma.f cpp -traditional -P -DBINTRAJ qm2_dftb_gammamat.f > _qm2_dftb_gammamat.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_gammamat.o _qm2_dftb_gammamat.f cpp -traditional -P -DBINTRAJ qm2_dftb_get_qmmm_forces.f > _qm2_dftb_get_qmmm_forces.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_get_qmmm_forces.o _qm2_dftb_get_qmmm_forces.f cpp -traditional -P -DBINTRAJ qm2_dftb_gettab.f > _qm2_dftb_gettab.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_gettab.o _qm2_dftb_gettab.f cpp -traditional -P -DBINTRAJ qm2_dftb_load_params.f > _qm2_dftb_load_params.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_load_params.o _qm2_dftb_load_params.f cpp -traditional -P -DBINTRAJ qm2_dftb_mulliken.f > _qm2_dftb_mulliken.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_mulliken.o _qm2_dftb_mulliken.f cpp -traditional -P -DBINTRAJ qm2_dftb_repulsiv.f > _qm2_dftb_repulsiv.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_repulsiv.o _qm2_dftb_repulsiv.f cpp -traditional -P -DBINTRAJ qm2_dftb_self.f > _qm2_dftb_self.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_self.o _qm2_dftb_self.f cpp -traditional -P -DBINTRAJ qm2_dftb_shift.f > _qm2_dftb_shift.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_shift.o _qm2_dftb_shift.f cpp -traditional -P -DBINTRAJ qm2_dftb_skpar.f > _qm2_dftb_skpar.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_skpar.o _qm2_dftb_skpar.f cpp -traditional -P -DBINTRAJ qm2_dftb_slkode.f > _qm2_dftb_slkode.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_slkode.o _qm2_dftb_slkode.f cpp -traditional -P -DBINTRAJ qm2_dftb_slktrafo.f > _qm2_dftb_slktrafo.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_slktrafo.o _qm2_dftb_slktrafo.f cpp -traditional -P -DBINTRAJ qm2_dftb_read_cm3.f > _qm2_dftb_read_cm3.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_read_cm3.o _qm2_dftb_read_cm3.f cpp -traditional -P -DBINTRAJ qm2_dftb_cm3.f > _qm2_dftb_cm3.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_cm3.o _qm2_dftb_cm3.f cpp -traditional -P -DBINTRAJ qm2_dftb_gb.f > _qm2_dftb_gb.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_gb.o _qm2_dftb_gb.f cpp -traditional -P -DBINTRAJ qm2_dftb_3rd_order.f > _qm2_dftb_3rd_order.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o qm2_dftb_3rd_order.o _qm2_dftb_3rd_order.f cd ../lapack; make skip skipping compilation of LAPACK cd ../blas; make skip skipping compilation of BLAS cd ../arpack && make install ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /Users/amber11/lib cd ../lib; make sys.a ar rv sys.a sys.o wallclock.o random.o veclib.o a - sys.o a - wallclock.o a - random.o a - veclib.o ranlib sys.a gfortran -o sqm constants.o findmask.o sqm.o xmin.o xminC.o amopen.o mexit.o assert.o timer_dummy.o nmlsrc.o qm_print_info.SQM.o qm2_energy.SQM.o qm2_read_nm_and_alloc.SQM.o qm2_scf.SQM.o qm2_dftb_scf.SQM.o qm2_allocate_e_repul.o qm2_calc_charges.o qm2_calc_rij_and_eqns.o qm2_dihed.o qm2_fock.o qm2_get_qm_forces.o qm2_get_qmmm_forces.o qm2_h1elec.o qm2_hcore_qmqm.o qm2_hcore_qmmm.o qm2_identify_peptide_links.o qm2_load_params_and_allocate.o qm2_repp.o qm2_rotate_qmqm.o qm2_core_core_repulsion.o qm2_core_core_repulsion_dxyz.o qm2_iterator_mod.o qm2_setup_orb_exp.o qm2_smallest_number.o qm2_fock_predict.o qm_gb.o qm_zero_charges.o qm_assign_atom_types.o qm_link_atoms.o qm2_print_charges.o qmmm_qmtheorymodule.o qm2_pm6_hof_module.o qm2_dftb_module.o qm2_dftb_broyden.o qm2_dftb_dispersion_egr.o qm2_dftb_dispersion_params.o qm2_dftb_dispersionread.o qm2_dftb_energy.o qm2_dftb_ewevge.o qm2_dftb_externalshift.o qm2_dftb_fermi.o qm2_dftb_get_qm_forces.o qm2_dftb_gamma.o qm2_dftb_gammamat.o qm2_dftb_get_qmmm_forces.o qm2_dftb_gettab.o qm2_dftb_load_params.o qm2_dftb_mulliken.o qm2_dftb_repulsiv.o qm2_dftb_self.o qm2_dftb_shift.o qm2_dftb_skpar.o qm2_dftb_slkode.o qm2_dftb_slktrafo.o qm2_dftb_read_cm3.o qm2_dftb_cm3.o qm2_dftb_gb.o qm2_dftb_3rd_order.o qmmm_module.o /Users/amber11/lib/arpack.a -framework Accelerate ../lib/sys.a mv sqm /Users/amber11/bin (cd ptraj && make install ) cd pdb && make gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdbrun.o pdbrun.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_read.o pdb_read.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sprntf.o pdb_sprntf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sscanf.o pdb_sscanf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_write.o pdb_write.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o ms.o ms.c ar rv libpdb.a pdbrun.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o ms.o a - pdbrun.o a - pdb_read.o a - pdb_sprntf.o a - pdb_sscanf.o a - pdb_write.o a - ms.o ranlib libpdb.a mv libpdb.a /Users/amber11/lib cd ../arpack && make ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /Users/amber11/lib gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o main.o main.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rdparm.o rdparm.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o dispatch.o dispatch.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o help.o help.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o utility.o utility.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o second.o second.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o io.o io.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o trajectory.o trajectory.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o netcdf_ptraj.o netcdf_ptraj.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parallel_ptraj.o parallel_ptraj.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o evec.o evec.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o torsion.o torsion.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o mask.o mask.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rms.o rms.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o display.o display.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o interface.o interface.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o energy.o energy.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o experimental.o experimental.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ptraj.o ptraj.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o actions.o actions.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o analyze.o analyze.c gfortran -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -c -o thermo.o thermo.f gfortran -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -c -o pubfft.o pubfft.f gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o cluster.o cluster.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o clusterLib.o clusterLib.c gcc -o rdparm main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o /Users/amber11/lib/libpdb.a /Users/amber11/lib/arpack.a -lgfortran -framework Accelerate ../netcdf/lib/libnetcdf.a -lm cd ../lapack; make skip skipping compilation of LAPACK cd ../blas; make skip skipping compilation of BLAS gcc -o ptraj main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o /Users/amber11/lib/libpdb.a /Users/amber11/lib/arpack.a -lgfortran -framework Accelerate ../netcdf/lib/libnetcdf.a -lm /bin/mv rdparm ptraj /Users/amber11/bin (cd reduce && make install ) installing ./toolclasses... g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c UseCount.cpp -o UseCount.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Point3d.cpp -o Point3d.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Stringclass.cpp -o Stringclass.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Hash.cpp -o Hash.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c utility.cpp -o utility.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c column_sprintf.cpp -o column_sprintf.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c column_sscanf.cpp -o column_sscanf.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c DisjointSets.cpp -o DisjointSets.o Loading libtoolclasses.a ... done installing ./libpdb... g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_read.cpp -o pdb_read.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_sprntf.cpp -o pdb_sprntf.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_sscanf.cpp -o pdb_sscanf.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_chars.cpp -o pdb_chars.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_type.cpp -o pdb_type.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb++.cpp -o pdb++.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdbinput.cpp -o pdbinput.o Loading libpdb++.a ... done installing ./reduce_src... g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o GraphToHoldScores.o GraphToHoldScores.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o reduce.o reduce.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o CTab.o CTab.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o ElementInfo.o ElementInfo.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o StdResH.o StdResH.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o ResBlk.o ResBlk.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomConn.o AtomConn.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomPositions.o AtomPositions.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o DotSph.o DotSph.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o Mover.o Mover.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o RotMethyl.o RotMethyl.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o RotDonor.o RotDonor.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o FlipMemo.o FlipMemo.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o CliqueList.o CliqueList.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomDescr.o AtomDescr.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o PDBrec.o PDBrec.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o MoveableNode.o MoveableNode.cpp gcc -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/Users/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -c -o hybrid_36_c.o hybrid_36_c.c g++ -o reduce GraphToHoldScores.o reduce.o CTab.o ElementInfo.o StdResH.o ResBlk.o AtomConn.o AtomPositions.o DotSph.o Mover.o RotMethyl.o RotDonor.o FlipMemo.o CliqueList.o AtomDescr.o PDBrec.o MoveableNode.o hybrid_36_c.o -L../libpdb -lpdb++ -L../toolclasses -ltoolclasses -lm mv reduce /Users/amber11/bin gunzip -c -d ../reduce_wwPDB_het_dict.txt.gz > /Users/amber11/dat/reduce_wwPDB_het_dict.txt (cd leap && make install ) Compiling basic programs cd src/leap && make installteLeap gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o basics.o basics.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o sysdepend.o sysdepend.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o stringExtra.o stringExtra.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o varArray.o varArray.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o getline.o getline.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o avl.o avl.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_format.o pdb_format.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_read.o pdb_read.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sprntf.o pdb_sprntf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sscanf.o pdb_sscanf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_write.o pdb_write.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o vector.o vector.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o zMatrix.o zMatrix.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o sort.o sort.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o bag.o bag.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o hash.o hash.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o dictionary.o dictionary.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o database.o database.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o nVector.o nVector.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o ring.o ring.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o matrix.o matrix.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o fortran.o fortran.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o displayer.o displayer.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o assoc.o assoc.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o atom.o atom.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o byteArray.o byteArray.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o collection.o collection.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o container.o container.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o internal.o internal.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o list.o list.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o loop.o loop.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o molecule.o molecule.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o oDouble.o oDouble.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o oInteger.o oInteger.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o oString.o oString.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o objekt.o objekt.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o parmSet.o parmSet.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o residue.o residue.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o unit.o unit.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o unitio.o unitio.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tripos.o tripos.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o graphUtil.o graphUtil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o select.o select.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o amber.o amber.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o build.o build.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o elements.o elements.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o library.o library.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o chirality.o chirality.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o minimizer.o minimizer.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o model.o model.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o parmLib.o parmLib.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdbFile.o pdbFile.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o mol2File.o mol2File.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tools.o tools.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o variables.o variables.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o parser.o parser.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o help.o help.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o utilMakeHelp.o utilMakeHelp.c gcc -o utilMakeHelp basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o utilMakeHelp.o -lm ./utilMakeHelp helptext.text helptext.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o helptext.o helptext.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o octree.o octree.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o commands.o commands.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o mathop.o mathop.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o block.o block.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o restraint.o restraint.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o hybrid.o hybrid.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tLeap.o tLeap.c gcc -o teLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o tLeap.o -lm mv teLeap /Users/amber11/bin Copying shell script cp tleap /Users/amber11/bin/tleap chmod +x /Users/amber11/bin/tleap make install_xleap cd src/Wc && make gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o MapAg.o MapAg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcActCB.o WcActCB.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcConvert.o WcConvert.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcCreate.o WcCreate.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcInvoke.o WcInvoke.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcLateBind.o WcLateBind.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcLoadRes.o WcLoadRes.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcName.o WcName.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcReg.o WcReg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcRegXt.o WcRegXt.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcSetValue.o WcSetValue.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcTemplate.o WcTemplate.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcWarn.o WcWarn.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcNameWidget.o WcNameWidget.c ar rv libWcLeap.a MapAg.o WcActCB.o WcConvert.o WcCreate.o WcInvoke.o WcLateBind.o WcLoadRes.o WcName.o WcReg.o WcRegXt.o WcSetValue.o WcTemplate.o WcWarn.o WcNameWidget.o a - MapAg.o a - WcActCB.o a - WcConvert.o a - WcCreate.o a - WcInvoke.o a - WcLateBind.o a - WcLoadRes.o a - WcName.o a - WcReg.o a - WcRegXt.o a - WcSetValue.o a - WcTemplate.o a - WcWarn.o a - WcNameWidget.o ranlib libWcLeap.a cd src/Xmu && make gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AllCmap.o AllCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Atoms.o Atoms.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ClientWin.o ClientWin.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Clip.o Clip.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CloseHook.o CloseHook.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CmapAlloc.o CmapAlloc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CrCmap.o CrCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CrPixFBit.o CrPixFBit.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CursorName.o CursorName.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CvtCache.o CvtCache.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CvtStdSel.o CvtStdSel.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DefErrMsg.o DefErrMsg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DelCmap.o DelCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DisplayQue.o DisplayQue.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Distinct.o Distinct.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DrawLogo.o DrawLogo.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DrRndRect.o DrRndRect.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o EditresCom.o EditresCom.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ExtAgent.o ExtAgent.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o FToCback.o FToCback.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o GetHost.o GetHost.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o GrayPixmap.o GrayPixmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Initer.o Initer.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o LocBitmap.o LocBitmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Lookup.o Lookup.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o LookupCmap.o LookupCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Lower.o Lower.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o RdBitF.o RdBitF.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ScrOfWin.o ScrOfWin.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ShapeWidg.o ShapeWidg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StdCmap.o StdCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToBS.o StrToBS.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToBmap.o StrToBmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToCurs.o StrToCurs.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToGrav.o StrToGrav.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToJust.o StrToJust.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToLong.o StrToLong.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToOrnt.o StrToOrnt.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToShap.o StrToShap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToWidg.o StrToWidg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o UpdMapHint.o UpdMapHint.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o VisCmap.o VisCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WidgetNode.o WidgetNode.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Xct.o Xct.c ar rv libXmu.a AllCmap.o Atoms.o ClientWin.o Clip.o CloseHook.o CmapAlloc.o CrCmap.o CrPixFBit.o CursorName.o CvtCache.o CvtStdSel.o DefErrMsg.o DelCmap.o DisplayQue.o Distinct.o DrawLogo.o DrRndRect.o EditresCom.o ExtAgent.o FToCback.o GetHost.o GrayPixmap.o Initer.o LocBitmap.o Lookup.o LookupCmap.o Lower.o RdBitF.o ScrOfWin.o ShapeWidg.o StdCmap.o StrToBS.o StrToBmap.o StrToCurs.o StrToGrav.o StrToJust.o StrToLong.o StrToOrnt.o StrToShap.o StrToWidg.o UpdMapHint.o VisCmap.o WidgetNode.o Xct.o a - AllCmap.o a - Atoms.o a - ClientWin.o a - Clip.o a - CloseHook.o a - CmapAlloc.o a - CrCmap.o a - CrPixFBit.o a - CursorName.o a - CvtCache.o a - CvtStdSel.o a - DefErrMsg.o a - DelCmap.o a - DisplayQue.o a - Distinct.o a - DrawLogo.o a - DrRndRect.o a - EditresCom.o a - ExtAgent.o a - FToCback.o a - GetHost.o a - GrayPixmap.o a - Initer.o a - LocBitmap.o a - Lookup.o a - LookupCmap.o a - Lower.o a - RdBitF.o a - ScrOfWin.o a - ShapeWidg.o a - StdCmap.o a - StrToBS.o a - StrToBmap.o a - StrToCurs.o a - StrToGrav.o a - StrToJust.o a - StrToLong.o a - StrToOrnt.o a - StrToShap.o a - StrToWidg.o a - UpdMapHint.o a - VisCmap.o a - WidgetNode.o a - Xct.o ranlib libXmu.a cd src/Xpm && make gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o data.o data.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o create.o create.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o misc.o misc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rgb.o rgb.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o scan.o scan.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parse.o parse.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o hashtable.o hashtable.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrBufFrI.o XpmCrBufFrI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrDataFrP.o XpmCrDataFrP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrPFrBuf.o XpmCrPFrBuf.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToI.o XpmRdFToI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrI.o XpmWrFFrI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrBufFrP.o XpmCrBufFrP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrIFrBuf.o XpmCrIFrBuf.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrPFrData.o XpmCrPFrData.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToP.o XpmRdFToP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrP.o XpmWrFFrP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrDataFrI.o XpmCrDataFrI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrIFrData.o XpmCrIFrData.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToData.o XpmRdFToData.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrData.o XpmWrFFrData.c ar rv libXpm.a data.o create.o misc.o rgb.o scan.o parse.o hashtable.o XpmCrBufFrI.o XpmCrDataFrP.o XpmCrPFrBuf.o XpmRdFToI.o XpmWrFFrI.o XpmCrBufFrP.o XpmCrIFrBuf.o XpmCrPFrData.o XpmRdFToP.o XpmWrFFrP.o XpmCrDataFrI.o XpmCrIFrData.o XpmRdFToData.o XpmWrFFrData.o a - data.o a - create.o a - misc.o a - rgb.o a - scan.o a - parse.o a - hashtable.o a - XpmCrBufFrI.o a - XpmCrDataFrP.o a - XpmCrPFrBuf.o a - XpmRdFToI.o a - XpmWrFFrI.o a - XpmCrBufFrP.o a - XpmCrIFrBuf.o a - XpmCrPFrData.o a - XpmRdFToP.o a - XpmWrFFrP.o a - XpmCrDataFrI.o a - XpmCrIFrData.o a - XpmRdFToData.o a - XpmWrFFrData.o ranlib libXpm.a cd src/Xraw && make gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o 3d.o 3d.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AllWidgets.o AllWidgets.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Arrow.o Arrow.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiSink.o AsciiSink.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiSrc.o AsciiSrc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiText.o AsciiText.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Box.o Box.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Clock.o Clock.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Command.o Command.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o color.o color.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Container.o Container.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Dialog.o Dialog.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Form.o Form.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Frame.o Frame.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Grip.o Grip.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Label.o Label.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o List.o List.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Logo.o Logo.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o MenuButton.o MenuButton.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Paned.o Paned.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Panner.o Panner.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Porthole.o Porthole.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Repeater.o Repeater.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Scrollbar.o Scrollbar.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ScrolledTable.o ScrolledTable.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Separator.o Separator.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Simple.o Simple.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SimpleMenu.o SimpleMenu.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Sme.o Sme.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SmeBSB.o SmeBSB.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SmeLine.o SmeLine.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StripChart.o StripChart.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o table.o table.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Table2.o Table2.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Text.o Text.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextSink.o TextSink.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextSrc.o TextSrc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextAction.o TextAction.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextPop.o TextPop.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextTr.o TextTr.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Toggle.o Toggle.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Tree.o Tree.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Vendor.o Vendor.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Viewport.o Viewport.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XawInit.o XawInit.c ar rv libXaw.a 3d.o AllWidgets.o Arrow.o AsciiSink.o AsciiSrc.o AsciiText.o Box.o Clock.o Command.o color.o Container.o Dialog.o Form.o Frame.o Grip.o Label.o List.o Logo.o MenuButton.o Paned.o Panner.o Porthole.o Repeater.o Scrollbar.o ScrolledTable.o Separator.o Simple.o SimpleMenu.o Sme.o SmeBSB.o SmeLine.o StripChart.o table.o Table2.o Text.o TextSink.o TextSrc.o TextAction.o TextPop.o TextTr.o Toggle.o Tree.o Vendor.o Viewport.o XawInit.o a - 3d.o a - AllWidgets.o a - Arrow.o a - AsciiSink.o a - AsciiSrc.o a - AsciiText.o a - Box.o a - Clock.o a - Command.o a - color.o a - Container.o a - Dialog.o a - Form.o a - Frame.o a - Grip.o a - Label.o a - List.o a - Logo.o a - MenuButton.o a - Paned.o a - Panner.o a - Porthole.o a - Repeater.o a - Scrollbar.o a - ScrolledTable.o a - Separator.o a - Simple.o a - SimpleMenu.o a - Sme.o a - SmeBSB.o a - SmeLine.o a - StripChart.o a - table.o a - Table2.o a - Text.o a - TextSink.o a - TextSrc.o a - TextAction.o a - TextPop.o a - TextTr.o a - Toggle.o a - Tree.o a - Vendor.o a - Viewport.o a - XawInit.o ranlib libXaw.a cd src/leap && make install gcc -o teLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o tLeap.o -lm gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xTank.o xTank.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xAction.o xAction.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o x3d.o x3d.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xBasics.o xBasics.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaLeapc.o xaLeapc.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaUnitEditor.o xaUnitEditor.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTable.o xaTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAtomTable.o xaAtomTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o XrawRegistr.o XrawRegistr.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaCommand.o xaCommand.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTools.o xaTools.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAtomParmTable.o xaAtomParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaBondParmTable.o xaBondParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAngleParmTable.o xaAngleParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaParmEditor.o xaParmEditor.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTorsionParmTable.o xaTorsionParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaImproperParmTable.o xaImproperParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaHBondParmTable.o xaHBondParmTable.c gcc -o xaLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o xTank.o xAction.o x3d.o xBasics.o xaLeapc.o xaUnitEditor.o xaTable.o xaAtomTable.o XrawRegistr.o xaCommand.o xaTools.o xaAtomParmTable.o xaBondParmTable.o xaAngleParmTable.o xaParmEditor.o xaTorsionParmTable.o xaImproperParmTable.o xaHBondParmTable.o ../Xraw/libXaw.a ../Wc/libWcLeap.a ../Xpm/libXpm.a ../Xmu/libXmu.a -L/usr/X11R6/lib -lXt -lXext -lSM -lICE -lX11 -lXau -lXdmcp -lm -lpthread m4 xaLeap.rm4 > XaLeap_wcl mv teLeap xaLeap /Users/amber11/bin mv XaLeap_wcl /Users/amber11/dat Copying shell script cp xleap /Users/amber11/bin/xleap chmod +x /Users/amber11/bin/xleap Copying pixmaps mkdir /Users/amber11/dat/pixmap cd pixmap; /bin/cp * /Users/amber11/dat/pixmap Finished with the install of LEaP (cd gleap && make install ) cd freelib && make cd readline && make gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o bind.o bind.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o callback.o callback.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o compat.o compat.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o complete.o complete.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o display.o display.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o funmap.o funmap.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o histexpand.o histexpand.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o histfile.o histfile.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o history.o history.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o histsearch.o histsearch.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o input.o input.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o isearch.o isearch.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o keymaps.o keymaps.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o kill.o kill.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o macro.o macro.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o mbutil.o mbutil.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o misc.o misc.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o nls.o nls.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o parens.o parens.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o readline.o readline.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o rltty.o rltty.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o savestring.o savestring.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o search.o search.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o shell.o shell.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o signals.o signals.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o termcap.o termcap.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o terminal.o terminal.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o text.o text.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o tilde.o tilde.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o tparam.o tparam.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o undo.o undo.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o util.o util.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o version.o version.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o vi_mode.o vi_mode.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o xmalloc.o xmalloc.c rm -f libreadline.a ar cqs libreadline.a bind.o callback.o compat.o complete.o display.o funmap.o histexpand.o histfile.o history.o histsearch.o input.o isearch.o keymaps.o kill.o macro.o mbutil.o misc.o nls.o parens.o readline.o rltty.o savestring.o search.o shell.o signals.o termcap.o terminal.o text.o tilde.o tparam.o undo.o util.o version.o vi_mode.o xmalloc.o cd mortsrc && make cd common && make g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o numvec.o numvec.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o matrix.o matrix.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o pertab.o pertab.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o fortran.o fortran.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o stralgo.o stralgo.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o crdalgo.o crdalgo.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o funstack.o funstack.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o geometry.o geometry.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o hashcode.o hashcode.cpp rm -f libcommon.a ar cqs libcommon.a numvec.o matrix.o pertab.o fortran.o stralgo.o crdalgo.o funstack.o geometry.o hashcode.o cd object && make g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o angl.o angl.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o dihe.o dihe.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o impr.o impr.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o resd.o resd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o atmv.o atmv.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o rela.o rela.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o data.o data.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o comp.o comp.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o root.o root.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o mole.o mole.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o morf.o morf.cpp cd objfun && make g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o wrapper.o wrapper.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o atomfun.o atomfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o bondfun.o bondfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o fixbond.o fixbond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o geomfun.o geomfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o hydrfun.o hydrfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o merge.o merge.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o parmfun.o parmfun.cpp cd ambfmt && make g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o ambfrc-amoeba.o ambfrc-amoeba.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o amboff.o amboff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o chain.o chain.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o energee.o energee.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o exclude.o exclude.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o extent.o extent.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o les.o les.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o parm.o parm.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o parmset.o parmset.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o prep.o prep.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o prmtop-amoeba.o prmtop-amoeba.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o prmtop.o prmtop.cpp cd atmask && make g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o condition.o condition.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o dist.o dist.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o logic.o logic.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o mask.o mask.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o paren.o paren.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o resd.o resd.cpp cd capbox && make g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o addions.o addions.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o octree.o octree.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o shaper.o shaper.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o solute.o solute.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o solvate.o solvate.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o solvent.o solvent.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o region.o region.cpp cd enefrc && make g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o bonding.o bonding.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o ctrlparm.o ctrlparm.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o nonbond-lst.o nonbond-lst.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o nonbond-egb.o nonbond-egb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o nonbond-pbc.o nonbond-pbc.cpp cd guilib && make g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o command.o command.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o console.o console.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o control.o control.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o grammar.o grammar.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o leaplog.o leaplog.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o mainwin.o mainwin.cpp cd format && make g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o mol.o mol.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o mdb.o mdb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o ext.o ext.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o frc.o frc.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o top.o top.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o sdf.o sdf.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o xyz.o xyz.cpp cd smarts && make g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o parse.o parse.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o reader.o reader.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o status.o status.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o finder.o finder.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o atomexpr.o atomexpr.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o tyrule.o tyrule.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o ring.o ring.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o subst.o subst.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o smarts.o smarts.cpp cd tripos && make g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o head.o head.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o resd.o resd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o sect.o sect.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o mol2.o mol2.cpp cd pdbent && make g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o resd.o resd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o mdlize.o mdlize.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o second.o second.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o pdbent.o pdbent.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o namemap.o namemap.cpp rm -f libmort.a ar cqs libmort.a ambfmt/ambfrc-amoeba.o ambfmt/amboff.o ambfmt/chain.o ambfmt/energee.o ambfmt/exclude.o ambfmt/extent.o ambfmt/les.o ambfmt/parm.o ambfmt/parmset.o ambfmt/prep.o ambfmt/prmtop-amoeba.o ambfmt/prmtop.o atmask/atom.o atmask/condition.o atmask/dist.o atmask/logic.o atmask/mask.o atmask/paren.o atmask/resd.o capbox/addions.o capbox/octree.o capbox/shaper.o capbox/solute.o capbox/solvate.o capbox/solvent.o capbox/region.o common/numvec.o common/matrix.o common/pertab.o common/fortran.o common/stralgo.o common/crdalgo.o common/funstack.o common/geometry.o common/hashcode.o enefrc/bonding.o enefrc/ctrlparm.o enefrc/nonbond-lst.o enefrc/nonbond-egb.o enefrc/nonbond-pbc.o format/mol.o format/mdb.o format/ext.o format/frc.o format/top.o format/sdf.o format/xyz.o guilib/command.o guilib/console.o guilib/control.o guilib/grammar.o guilib/leaplog.o guilib/mainwin.o guilib/leaplog.o object/atom.o object/angl.o object/bond.o object/dihe.o object/impr.o object/resd.o object/atmv.o object/rela.o object/data.o object/comp.o object/root.o object/mole.o object/morf.o objfun/wrapper.o objfun/atomfun.o objfun/bondfun.o objfun/fixbond.o objfun/geomfun.o objfun/hydrfun.o objfun/merge.o objfun/parmfun.o pdbent/atom.o pdbent/bond.o pdbent/resd.o pdbent/mdlize.o pdbent/second.o pdbent/pdbent.o pdbent/namemap.o smarts/parse.o smarts/reader.o smarts/status.o smarts/finder.o smarts/atomexpr.o smarts/tyrule.o smarts/ring.o smarts/subst.o smarts/smarts.o tripos/atom.o tripos/bond.o tripos/head.o tripos/resd.o tripos/sect.o tripos/mol2.o cd plugins && make g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o add.o add.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o addmap.o addmap.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o addions.o addions.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o center.o center.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o charge.o charge.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o copy.o copy.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o create.o create.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o desc.o desc.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o delete.o delete.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o energy.o energy.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o geom.o geom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o help.o help.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o impose.o impose.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o list.o list.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadcrd.o loadcrd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadfrc.o loadfrc.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadmol2.o loadmol2.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadoff.o loadoff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadpdb.o loadpdb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadprep.o loadprep.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadsdf.o loadsdf.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o measure.o measure.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o merge.o merge.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o moloper.o moloper.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o savemol2.o savemol2.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o saveoff.o saveoff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o savepdb.o savepdb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o saveprm.o saveprm.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o savesdf.o savesdf.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o set.o set.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o shell.o shell.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o solvate.o solvate.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o source.o source.cpp g++ -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -c -o transform.o transform.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o zmatrix.o zmatrix.cpp rm -f libplugins.a ar cqs libplugins.a add.o addmap.o addions.o bond.o center.o charge.o copy.o create.o desc.o delete.o energy.o geom.o help.o impose.o list.o loadcrd.o loadfrc.o loadmol2.o loadoff.o loadpdb.o loadprep.o loadsdf.o measure.o merge.o moloper.o savemol2.o saveoff.o savepdb.o saveprm.o savesdf.o set.o shell.o solvate.o source.o transform.o zmatrix.o cd leapsrc && make install g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o strmain.o strmain.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o strbuff.o strbuff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o plugins.o plugins.cpp g++ -static-libgcc -o sleap strmain.o strbuff.o plugins.o ../freelib/readline/libreadline.a -lm ../plugins/libplugins.a ../mortsrc/libmort.a mv sleap /Users/amber11/bin (cd cifparse && make install ) flex -t cifparse.l | sed 's/yy/cifp/g' > lex.cif.c /Users/amber11/bin/yacc -v -d cifparse.y sed 's/yy/cifp/g' < y.tab.c > cifp.tab.c sed 's/yy/cifp/g' < y.tab.h > cifp.tab.h rm -f y.tab.c y.tab.h gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ lex.cif.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -Dflex cifp.tab.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ cifparse.c rm -f cifparse.a ar rv cifparse.a lex.cif.o cifp.tab.o cifparse.o a - lex.cif.o a - cifp.tab.o a - cifparse.o ranlib cifparse.a mv cifparse.a /Users/amber11/lib (cd nab && make install ) gcc -DBINDIR='"."' -DINCDIR='"."' -DLIBDIR='"."' -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -DCC='"gcc"' -DCPP='"/Users/amber11/bin/ucpp -l"' -DFLIBS='"/Users/amber11/lib/arpack.a -lgfortran -framework Accelerate "' -o nab nab.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o nab2c.o nab2c.c flex nablex.l /Users/amber11/bin/yacc -d nabgrm.y gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o cgen.o cgen.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -Dflex y.tab.c (cd ../semantics; make) gcc -DDATDIR='"/Users/amber11/dat"' -o parse parse.c ./parse *.rules mv ../semantics/checkexpr.c . gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o checkexpr.o checkexpr.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o dumpnode.o dumpnode.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o errormsg.o errormsg.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o fixexpr.o fixexpr.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o genavscode.o genavscode.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o node.o node.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o symbol.o symbol.c gcc -o nab2c nab2c.o cgen.o checkexpr.o dumpnode.o errormsg.o fixexpr.o genavscode.o node.o symbol.o y.tab.o cd ../sff; make install gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o binpos.o binpos.c gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o conjgrad.o conjgrad.c gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o lmodC.o lmodC.c gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o memutil.o memutil.c gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o nblist.o nblist.c gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o newton.o newton.c gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o nmode.o nmode.c gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o prm.o prm.c gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o rand2.o rand2.c gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o sasad.o sasad.c flex -t mm_options.l | sed -e 's/{stdout}/{DONTchangeSTDOUThere}/' -e 's/yy/mmo/g' -e 's/stdout/nabout/' -e 's/DONTchangeSTDOUThere/stdout/' > lex.mm_options.c gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o sff.o sff.c gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o time.o time.c gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o traceback.o traceback.c gcc -c -Dflex -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o xminC.o xminC.c rm -f libsff.a ar rv libsff.a binpos.o conjgrad.o lmodC.o memutil.o nblist.o newton.o nmode.o prm.o rand2.o sasad.o sff.o time.o traceback.o xminC.o a - binpos.o a - conjgrad.o a - lmodC.o a - memutil.o a - nblist.o a - newton.o a - nmode.o a - prm.o a - rand2.o a - sasad.o a - sff.o a - time.o a - traceback.o a - xminC.o ranlib libsff.a mv libsff.a /Users/amber11/lib cd ../pbsa; make libinstall gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o interface.o interface.c cpp -traditional -P -DBINTRAJ -DPBSA pbsaapi.f > _pbsaapi.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o pbsaapi.o _pbsaapi.f cpp -traditional -P -DBINTRAJ -DLIBPBSA pb_read.f > _pb_read.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o pb_read.LIBPBSA.o _pb_read.f rm -f libpbsa.a ar rv libpbsa.a interface.o pbsaapi.o myopen.o pb_read.LIBPBSA.o pb_force.o sa_driver.o pb_nlsolver.o pb_lsolver.o dsvdc.o timer.o pb_init.o pb_exmol.o np_force.o pb_direct.o pb_list.o pb_write.o pb_mpfrc.o decomp.o rgroup.o rfree.o a - interface.o a - pbsaapi.o a - myopen.o a - pb_read.LIBPBSA.o a - pb_force.o a - sa_driver.o a - pb_nlsolver.o a - pb_lsolver.o a - dsvdc.o a - timer.o a - pb_init.o a - pb_exmol.o a - np_force.o a - pb_direct.o a - pb_list.o a - pb_write.o a - pb_mpfrc.o a - decomp.o a - rgroup.o a - rfree.o ranlib libpbsa.a /bin/mv libpbsa.a /Users/amber11/lib ./nab -c allatom_to_dna3.nab gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o axis2frame.o axis2frame.c gcc -c -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ bonded_atoms.c gcc -c -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DDATDIR='"/Users/amber11/dat"' boundsutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o chirvol.o chirvol.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o database.o database.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o deform_ener.o deform_ener.c ./nab -c dna3.nab ./nab -c dna3_to_allatom.nab gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o dump.o dump.c flex -t dg_options.l | sed -e 's/{stdout}/{DONTchangeSTDOUThere}/' -e 's/yy/dgo/g' -e 's/stdout/nabout/' -e 's/DONTchangeSTDOUThere/stdout/' > lex.dg_options.c gcc -c -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -Dflex embed.c ./nab -c -O0 -DDATDIR='"/Users/amber11/dat"' fd_helix.nab gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o frameutil.o frameutil.c gcc -c -DDATDIR='"/Users/amber11/dat"' getdist.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o hashutil.o hashutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o jacobi.o jacobi.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o match.o match.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o matop.o matop.c gcc -c -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ molio.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o molsurf.o molsurf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o molutil.o molutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o nab2avs.o nab2avs.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o nab2geom.o nab2geom.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pointutil.o pointutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o prm.o prm.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o regexp.o regexp.c gcc -c -DDATDIR='"/Users/amber11/dat"' reslib.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o select_atoms.o select_atoms.c gcc -c -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -Dflex mme_init.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o stringutil.o stringutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o temputil.o temputil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tm_malloc.o tm_malloc.c ./nab -c bdna.nab ./nab -c dg_helix.nab ./nab -c getchivol.nab ./nab -c getres.nab ./nab -c getseq_from_pdb.nab ./nab -c getxyz_from_pdb.nab ./nab -c -DBINDIR='"/Users/amber11/bin"' -DDATDIR='"/Users/amber11/dat"' getpdb_prm.nab ./nab -c getpdb_rlb.nab ./nab -c linkprot.nab ./nab -c link_na.nab ./nab -c -DDATDIR='"/Users/amber11/dat"' na_anal.nab ./nab -c setboundsfromdb.nab ./nab -c setchiplane.nab ./nab -c wc_basepair.nab ./nab -c wc_complement.nab ./nab -c wc_helix.nab ./nab -c yammp.nab cd ../rism && make librism && \ rm -f amber_rism_interface.o && make amber_rism_interface.o cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ safemem.f > _safemem.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o safemem.o _safemem.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_solu_c.f > _rism3d_solu_c.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o rism3d_solu_c.o _rism3d_solu_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_solv_c.f > _rism3d_solv_c.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o rism3d_solv_c.o _rism3d_solv_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism_fft.f > _rism_fft.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o rism_fft.o _rism_fft.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ mdiis_orig_c.f > _mdiis_orig_c.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o mdiis_orig_c.o _mdiis_orig_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ mdiis_blas_c.f > _mdiis_blas_c.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o mdiis_blas_c.o _mdiis_blas_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ mdiis_c.f > _mdiis_c.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o mdiis_c.o _mdiis_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_csv.f > _rism3d_csv.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o rism3d_csv.o _rism3d_csv.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_c.f > _rism3d_c.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o rism3d_c.o _rism3d_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_opendx.f > _rism3d_opendx.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o rism3d_opendx.o _rism3d_opendx.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ fce_c.f > _fce_c.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o fce_c.o _fce_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ blend.f > _blend.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o blend.o _blend.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rdxvv.f > _rdxvv.f gfortran -c -O0 -ffree-form -o rdxvv.o _rdxvv.f ar rv /Users/amber11/lib/librism.a quaternion.o rism_util.o rism3d_c.o safemem.o rism3d_csv.o rism3d_opendx.o rism3d_solv_c.o rism3d_solu_c.o fce_c.o erfcfun.o blend.o rdxvv.o mdiis_orig_c.o mdiis_blas_c.o mdiis_c.o rism_fft.o r - quaternion.o r - rism_util.o r - rism3d_c.o r - safemem.o r - rism3d_csv.o r - rism3d_opendx.o r - rism3d_solv_c.o r - rism3d_solu_c.o r - fce_c.o r - erfcfun.o r - blend.o r - rdxvv.o r - mdiis_orig_c.o r - mdiis_blas_c.o r - mdiis_c.o r - rism_fft.o ranlib /Users/amber11/lib/librism.a cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ amber_rism_interface.f > _amber_rism_interface.f gfortran -c -O3 -mtune=generic -msse -mfpmath=sse -ffree-form -o amber_rism_interface.o _amber_rism_interface.f cd ../lib; make amopen.o; make nxtsec.o make[2]: `amopen.o' is up to date. make[2]: `nxtsec.o' is up to date. rm -f libnab.a if [ "librism" = 'librism' ]; then \ mkdir -p /Users/amber11/lib/temp; \ cd /Users/amber11/lib/temp; \ for lib in /Users/amber11/lib/libdrfftw.a /Users/amber11/lib/libdfftw.a; do \ ar x ${lib}; \ done;\ fi ar rv libnab.a ../sff/binpos.o ../sff/conjgrad.o ../sff/lmodC.o ../sff/nblist.o ../sff/newton.o ../sff/nmode.o ../sff/memutil.o ../sff/prm.o ../sff/rand2.o ../sff/sasad.o ../sff/sff.o ../sff/time.o ../sff/traceback.o ../sff/xminC.o allatom_to_dna3.o axis2frame.o bonded_atoms.o boundsutil.o chirvol.o database.o deform_ener.o dna3.o dna3_to_allatom.o dump.o embed.o fd_helix.o frameutil.o getdist.o hashutil.o jacobi.o match.o matop.o molio.o molsurf.o molutil.o nab2avs.o nab2geom.o pointutil.o prm.o regexp.o reslib.o select_atoms.o mme_init.o stringutil.o temputil.o tm_malloc.o bdna.o dg_helix.o getchivol.o getres.o getseq_from_pdb.o getxyz_from_pdb.o getpdb_prm.o getpdb_rlb.o linkprot.o link_na.o na_anal.o setboundsfromdb.o setchiplane.o wc_basepair.o wc_complement.o wc_helix.o yammp.o ../pbsa/interface.o ../pbsa/pbsaapi.o ../pbsa/myopen.o ../pbsa/pb_read.LIBPBSA.o ../pbsa/pb_force.o ../pbsa/sa_driver.o ../pbsa/pb_nlsolver.o ../pbsa/pb_lsolver.o ../pbsa/dsvdc.o ../pbsa/timer.o ../pbsa/pb_init.o ../pbsa/pb_exmol.o ../pbsa/np_force.o ../pbsa/pb_direct.o ../pbsa/pb_list.o ../pbsa/pb_write.o ../pbsa/pb_mpfrc.o ../pbsa/decomp.o ../pbsa/rgroup.o ../pbsa/rfree.o ../rism/quaternion.o ../rism/rism_util.o ../rism/rism3d_c.o ../rism/safemem.o ../rism/rism3d_csv.o ../rism/rism3d_opendx.o ../rism/rism3d_solv_c.o ../rism/rism3d_solu_c.o ../rism/fce_c.o ../rism/blend.o ../rism/rdxvv.o ../rism/mdiis_orig_c.o ../rism/mdiis_blas_c.o ../rism/mdiis_c.o ../rism/rism_fft.o ../rism/erfcfun.o ../rism/amber_rism_interface.o ../lib/amopen.o ../lib/nxtsec.o /Users/amber11/lib/temp/* a - ../sff/binpos.o a - ../sff/conjgrad.o a - ../sff/lmodC.o a - ../sff/nblist.o a - ../sff/newton.o a - ../sff/nmode.o a - ../sff/memutil.o a - ../sff/prm.o a - ../sff/rand2.o a - ../sff/sasad.o a - ../sff/sff.o a - ../sff/time.o a - ../sff/traceback.o a - ../sff/xminC.o a - allatom_to_dna3.o a - axis2frame.o a - bonded_atoms.o a - boundsutil.o a - chirvol.o a - database.o a - deform_ener.o a - dna3.o a - dna3_to_allatom.o a - dump.o a - embed.o a - fd_helix.o a - frameutil.o a - getdist.o a - hashutil.o a - jacobi.o a - match.o a - matop.o a - molio.o a - molsurf.o a - molutil.o a - nab2avs.o a - nab2geom.o a - pointutil.o a - prm.o a - regexp.o a - reslib.o a - select_atoms.o a - mme_init.o a - stringutil.o a - temputil.o a - tm_malloc.o a - bdna.o a - dg_helix.o a - getchivol.o a - getres.o a - getseq_from_pdb.o a - getxyz_from_pdb.o a - getpdb_prm.o a - getpdb_rlb.o a - linkprot.o a - link_na.o a - na_anal.o a - setboundsfromdb.o a - setchiplane.o a - wc_basepair.o a - wc_complement.o a - wc_helix.o a - yammp.o a - ../pbsa/interface.o a - ../pbsa/pbsaapi.o a - ../pbsa/myopen.o a - ../pbsa/pb_read.LIBPBSA.o a - ../pbsa/pb_force.o a - ../pbsa/sa_driver.o a - ../pbsa/pb_nlsolver.o a - ../pbsa/pb_lsolver.o a - ../pbsa/dsvdc.o a - ../pbsa/timer.o a - ../pbsa/pb_init.o a - ../pbsa/pb_exmol.o a - ../pbsa/np_force.o a - ../pbsa/pb_direct.o a - ../pbsa/pb_list.o a - ../pbsa/pb_write.o a - ../pbsa/pb_mpfrc.o a - ../pbsa/decomp.o a - ../pbsa/rgroup.o a - ../pbsa/rfree.o a - ../rism/quaternion.o a - ../rism/rism_util.o a - ../rism/rism3d_c.o a - ../rism/safemem.o a - ../rism/rism3d_csv.o a - ../rism/rism3d_opendx.o a - ../rism/rism3d_solv_c.o a - ../rism/rism3d_solu_c.o a - ../rism/fce_c.o a - ../rism/blend.o a - ../rism/rdxvv.o a - ../rism/mdiis_orig_c.o a - ../rism/mdiis_blas_c.o a - ../rism/mdiis_c.o a - ../rism/rism_fft.o a - ../rism/erfcfun.o a - ../rism/amber_rism_interface.o a - ../lib/amopen.o a - ../lib/nxtsec.o a - /Users/amber11/lib/temp/__.SYMDEF SORTED a - /Users/amber11/lib/temp/config.o a - /Users/amber11/lib/temp/executor.o a - /Users/amber11/lib/temp/fcr_1.o a - /Users/amber11/lib/temp/fcr_10.o a - /Users/amber11/lib/temp/fcr_11.o a - /Users/amber11/lib/temp/fcr_12.o a - /Users/amber11/lib/temp/fcr_128.o a - /Users/amber11/lib/temp/fcr_13.o a - /Users/amber11/lib/temp/fcr_14.o a - /Users/amber11/lib/temp/fcr_15.o a - /Users/amber11/lib/temp/fcr_16.o a - /Users/amber11/lib/temp/fcr_2.o a - /Users/amber11/lib/temp/fcr_3.o a - /Users/amber11/lib/temp/fcr_32.o a - /Users/amber11/lib/temp/fcr_4.o a - /Users/amber11/lib/temp/fcr_5.o a - /Users/amber11/lib/temp/fcr_6.o a - /Users/amber11/lib/temp/fcr_64.o a - /Users/amber11/lib/temp/fcr_7.o a - /Users/amber11/lib/temp/fcr_8.o a - /Users/amber11/lib/temp/fcr_9.o a - /Users/amber11/lib/temp/fftwf77.o a - /Users/amber11/lib/temp/fftwnd.o a - /Users/amber11/lib/temp/fhb_10.o a - /Users/amber11/lib/temp/fhb_16.o a - /Users/amber11/lib/temp/fhb_2.o a - /Users/amber11/lib/temp/fhb_3.o a - /Users/amber11/lib/temp/fhb_32.o a - /Users/amber11/lib/temp/fhb_4.o a - /Users/amber11/lib/temp/fhb_5.o a - /Users/amber11/lib/temp/fhb_6.o a - /Users/amber11/lib/temp/fhb_7.o a - /Users/amber11/lib/temp/fhb_8.o a - /Users/amber11/lib/temp/fhb_9.o a - /Users/amber11/lib/temp/fhf_10.o a - /Users/amber11/lib/temp/fhf_16.o a - /Users/amber11/lib/temp/fhf_2.o a - /Users/amber11/lib/temp/fhf_3.o a - /Users/amber11/lib/temp/fhf_32.o a - /Users/amber11/lib/temp/fhf_4.o a - /Users/amber11/lib/temp/fhf_5.o a - /Users/amber11/lib/temp/fhf_6.o a - /Users/amber11/lib/temp/fhf_7.o a - /Users/amber11/lib/temp/fhf_8.o a - /Users/amber11/lib/temp/fhf_9.o a - /Users/amber11/lib/temp/fn_1.o a - /Users/amber11/lib/temp/fn_10.o a - /Users/amber11/lib/temp/fn_11.o a - /Users/amber11/lib/temp/fn_12.o a - /Users/amber11/lib/temp/fn_13.o a - /Users/amber11/lib/temp/fn_14.o a - /Users/amber11/lib/temp/fn_15.o a - /Users/amber11/lib/temp/fn_16.o a - /Users/amber11/lib/temp/fn_2.o a - /Users/amber11/lib/temp/fn_3.o a - /Users/amber11/lib/temp/fn_32.o a - /Users/amber11/lib/temp/fn_4.o a - /Users/amber11/lib/temp/fn_5.o a - /Users/amber11/lib/temp/fn_6.o a - /Users/amber11/lib/temp/fn_64.o a - /Users/amber11/lib/temp/fn_7.o a - /Users/amber11/lib/temp/fn_8.o a - /Users/amber11/lib/temp/fn_9.o a - /Users/amber11/lib/temp/fni_1.o a - /Users/amber11/lib/temp/fni_10.o a - /Users/amber11/lib/temp/fni_11.o a - /Users/amber11/lib/temp/fni_12.o a - /Users/amber11/lib/temp/fni_13.o a - /Users/amber11/lib/temp/fni_14.o a - /Users/amber11/lib/temp/fni_15.o a - /Users/amber11/lib/temp/fni_16.o a - /Users/amber11/lib/temp/fni_2.o a - /Users/amber11/lib/temp/fni_3.o a - /Users/amber11/lib/temp/fni_32.o a - /Users/amber11/lib/temp/fni_4.o a - /Users/amber11/lib/temp/fni_5.o a - /Users/amber11/lib/temp/fni_6.o a - /Users/amber11/lib/temp/fni_64.o a - /Users/amber11/lib/temp/fni_7.o a - /Users/amber11/lib/temp/fni_8.o a - /Users/amber11/lib/temp/fni_9.o a - /Users/amber11/lib/temp/frc_1.o a - /Users/amber11/lib/temp/frc_10.o a - /Users/amber11/lib/temp/frc_11.o a - /Users/amber11/lib/temp/frc_12.o a - /Users/amber11/lib/temp/frc_128.o a - /Users/amber11/lib/temp/frc_13.o a - /Users/amber11/lib/temp/frc_14.o a - /Users/amber11/lib/temp/frc_15.o a - /Users/amber11/lib/temp/frc_16.o a - /Users/amber11/lib/temp/frc_2.o a - /Users/amber11/lib/temp/frc_3.o a - /Users/amber11/lib/temp/frc_32.o a - /Users/amber11/lib/temp/frc_4.o a - /Users/amber11/lib/temp/frc_5.o a - /Users/amber11/lib/temp/frc_6.o a - /Users/amber11/lib/temp/frc_64.o a - /Users/amber11/lib/temp/frc_7.o a - /Users/amber11/lib/temp/frc_8.o a - /Users/amber11/lib/temp/frc_9.o a - /Users/amber11/lib/temp/ftw_10.o a - /Users/amber11/lib/temp/ftw_16.o a - /Users/amber11/lib/temp/ftw_2.o a - /Users/amber11/lib/temp/ftw_3.o a - /Users/amber11/lib/temp/ftw_32.o a - /Users/amber11/lib/temp/ftw_4.o a - /Users/amber11/lib/temp/ftw_5.o a - /Users/amber11/lib/temp/ftw_6.o a - /Users/amber11/lib/temp/ftw_64.o a - /Users/amber11/lib/temp/ftw_7.o a - /Users/amber11/lib/temp/ftw_8.o a - /Users/amber11/lib/temp/ftw_9.o a - /Users/amber11/lib/temp/ftwi_10.o a - /Users/amber11/lib/temp/ftwi_16.o a - /Users/amber11/lib/temp/ftwi_2.o a - /Users/amber11/lib/temp/ftwi_3.o a - /Users/amber11/lib/temp/ftwi_32.o a - /Users/amber11/lib/temp/ftwi_4.o a - /Users/amber11/lib/temp/ftwi_5.o a - /Users/amber11/lib/temp/ftwi_6.o a - /Users/amber11/lib/temp/ftwi_64.o a - /Users/amber11/lib/temp/ftwi_7.o a - /Users/amber11/lib/temp/ftwi_8.o a - /Users/amber11/lib/temp/ftwi_9.o a - /Users/amber11/lib/temp/generic.o a - /Users/amber11/lib/temp/malloc.o a - /Users/amber11/lib/temp/planner.o a - /Users/amber11/lib/temp/putils.o a - /Users/amber11/lib/temp/rader.o a - /Users/amber11/lib/temp/rconfig.o a - /Users/amber11/lib/temp/rexec.o a - /Users/amber11/lib/temp/rexec2.o a - /Users/amber11/lib/temp/rfftwf77.o a - /Users/amber11/lib/temp/rfftwnd.o a - /Users/amber11/lib/temp/rgeneric.o a - /Users/amber11/lib/temp/rplanner.o a - /Users/amber11/lib/temp/timer.o a - /Users/amber11/lib/temp/twiddle.o a - /Users/amber11/lib/temp/wisdom.o a - /Users/amber11/lib/temp/wisdomio.o rm -rf /Users/amber11/lib/temp ranlib libnab.a gcc -DBINDIR='"/Users/amber11/bin"' \ -DINCDIR='"/Users/amber11/include"' \ -DLIBDIR='"/Users/amber11/lib"' \ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DCC='"gcc"' -DCPP='"/Users/amber11/bin/ucpp -l"' -DFLIBS='"/Users/amber11/lib/arpack.a -lgfortran -framework Accelerate "' \ -o nab_install nab.c mv -f nab_install /Users/amber11/bin/nab mv -f nab2c /Users/amber11/bin mv -f libnab.a /Users/amber11/lib rm -f /Users/amber11/include/nabcode.h /Users/amber11/include/defreal.h /Users/amber11/include/nab.h cp nabcode.h /Users/amber11/include cp nabtypes.h /Users/amber11/include cp defreal.h /Users/amber11/include cp nab.h /Users/amber11/include cp xmin_opt.h lmod_opt.h /Users/amber11/include cp lmodprmtop /Users/amber11/bin (cd nss && make install ) /Users/amber11/bin/nab -c symop.nab /Users/amber11/bin/nab -c matop.c /Users/amber11/bin/nab -c tss.c ar rv /Users/amber11/lib/libnab.a symop.o matop.o tss.o r - matop.o a - symop.o a - tss.o ranlib /Users/amber11/lib/libnab.a /Users/amber11/bin/nab -c matextract.nab /Users/amber11/bin/nab -o matextract matextract.o /Users/amber11/bin/nab -c matgen.nab /Users/amber11/bin/nab -o matgen matgen.o