Re: [AMBER] RDF 3 files and 3 columns

From: Bill Ross <ross.cgl.ucsf.EDU>
Date: Thu, 29 Jul 2010 13:28:42 -0700

> trajin pdb_bond_wat_md1_exp.mdcrd
> ...

This is ptraj input.

> all volume and standard files give me RDF=0, only carnal has
> got some non zero values in both cases!

You are comparing carnal to ptraj..

> how do I get the density from carnal, what unit it is?

I believe RDF is in units of atomic centers.

> I really do not what carnal is, am using amber9.

Carnal is no longer supported, hopefully you will get the
answers you need regarding ptraj.


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Received on Thu Jul 29 2010 - 13:30:03 PDT
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