Re: [AMBER] very high and unstable RMSD

From: Kevin Hauser <84hauser.gmail.com>
Date: Thu, 29 Jul 2010 00:34:36 -0400

Sorry, CA RMSD. So sometimes the N- and C- termini in crystal structures,
for example, are disordered. That is, the crystal contains an ensemble of
conformations of these N- and C-termini...

On Thu, Jul 29, 2010 at 12:32 AM, Kevin Hauser <84hauser.gmail.com> wrote:

> Hi, Sangita,
>
>
> Out of curiosity, did they include the flailing N- and C-termini in the
> RMSD calculation? Was it CA RMSD? CA,N,C RMSD? Heavy atom RMSD? or All atom
> RMSD?
>
>
> -kevin
> 



-- 
-- - -
HK
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Kevin Eduard Hauser
National Science Foundation,
LSAMP Bridge to the Doctorate Fellow
The Department of Chemistry
Stony Brook University
Stony Brook, New York 11794
Phone: (561) 635.1848
Email:  84hauser.gmail.com
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Received on Wed Jul 28 2010 - 22:00:05 PDT
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