Sorry to double post, but also in the timing of the 'make
test.parallel' I got the following
== BEGIN ==
# time make test.parallel
... CUT ...
<CTRL-C>
222 file comparisons passed
0 file comparisons failed
0 tests experienced errors
Test log file saved as logs/test_amber_parallel/2010-07-27_15-50-33.log
No test diffs to save!
real 1145m22.168s
user 1m32.174s
sys 0m10.422s
#
== END ==
The real time is completely off from the user and system time.
Perhaps there is an MPI message passing loop in the code, or in my MPI
implementation.
-- Marc
On Wed, Jul 28, 2010 at 11:03 AM, Marc Moreau <jebnor.gmail.com> wrote:
> Hello all,
>
> I'm running test of my parallel build and I am experiencing an odd
> even. When the test gets to the
> " cd PIMD/full_cmd_water/equilib && ./Run.full_cmd " test, it seems to
> take forever. I was running:
>
> # export DO_PARALLEL='mpiexec -n 8'
> # cd $AMBERHOME/test
> # make test.parallel
>
> and it ran for more than 8 hours without returning. It seemed to have
> run properly with 2 and 4 cores.
>
> All the tests up to that point passed without fault.
>
> -- Marc
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jul 28 2010 - 10:30:05 PDT
