Re: [AMBER] question about bond command

From: Bill Ross <ross.cgl.ucsf.EDU>
Date: Thu, 22 Jul 2010 12:38:28 -0700

> concerning connect command: my residu connects to others using 5 atoms.
> I never used connect command, is this to define head and tail?

You would use the 'set' command I believe, to set connectX atoms
and head=connect0 and tail=connect1. This would be when defining
your residues before saveoff. Then after loadpdb you would use
the bond cmd to join the relevant atoms defined with connectX
property (X in {0, 1, 2, ...}).

See the tutorials for details.


AMBER mailing list
Received on Thu Jul 22 2010 - 13:00:04 PDT
Custom Search