Hi,
Is it possible to run mm_pbsa.pl in parallel? If so, can u plz give the
procedure and script for parallel-mmpbsa.
Thanks a lot in advance...
Asfa.
On Wed, Jul 21, 2010 at 4:03 PM, Anselm Horn <
Anselm.Horn.biochem.uni-erlangen.de> wrote:
> Dear all,
>
> when I try to run some MM-GBSA calculations for a large number of
> snapshots (> 10,000) in parallel (with the number of processes less than
> the number of available cores on the machine, just to be sure), the
> mm_pbsa.pl script exits with the following error:
>
> Finished process 256 with PID 9546 has wrong exit code 0
> For details see:
> http://ambermd.org/Questions/mm_pbsa.html#ana_finished_proc
>
> This program error happens in different runs at a similar snapshot
> number (around 256). Has anyone else experienced such behaviour?
> Is there a solution, or a known limitation of the script?
>
> Regards,
>
> Anselm
>
> Bioinformatik
> Friedrich-Alexander-Universität Erlangen-Nürnberg
> Germany
>
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Received on Wed Jul 21 2010 - 04:30:04 PDT
