Re: [AMBER] L and D peptides

From: Jason Swails <>
Date: Tue, 20 Jul 2010 15:51:41 -0400

You will have to build it first, though you can name all of the residues
TYR. The templates loaded into leap are only for the one form.

Good luck!

On Tue, Jul 20, 2010 at 12:52 PM, Jorgen Simonsen <>wrote:

> Hi all,
> I am simulating a L-Tyr-L-Tyr-L-Tyr-L-Tyr-LTyr ect peptide and want to
> observe if the same is true for the D-isomer. I use the sequence function
> within ambertools to generate the peptide
> seq = sequence { TYR TYR TYR TYR TYR}
> is it possible to do the same with the D-isomer or do I have to build it
> first? Or is it already available ?
> _______________________________________________
> AMBER mailing list

Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
AMBER mailing list
Received on Tue Jul 20 2010 - 13:00:03 PDT
Custom Search