Hello,
There is no packaged command to add a certain concentration of ions. You
will have to figure out how many Na+ and Cl- ions need to be added to bring
your total concentration to 0.5 M and add that many of each ion. However,
you should still neutralize your system.
Hope this helps,
Jason
On Tue, Jul 20, 2010 at 5:08 AM, Neha Gandhi <n.gandhiau.gmail.com> wrote:
> Hi List,
>
> I don't want to neutralise my molecule using counterions, instead I
> would like to add 0.5 M NaCl concentration. How can I do it using
> addions in amber?
>
> Many thanks,
> Regards,
> Neha Gandhi,
> School of Biomedical Sciences,
> Curtin University of Technology,
> GPO Box U1987 Perth,
> Western Australia 6845
>
> _______________________________________________
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> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Tue Jul 20 2010 - 06:00:03 PDT
