[AMBER] Problem with sander.MPI

From: moacyr comar <mcomjr.gmail.com>
Date: Sat, 17 Jul 2010 16:15:42 -0300

Dear Amber user's.

I have tried run sander.MPI on intel quad core under Fedora 13, using
openmpi, but all the times I submit the job, it failed. The command line is

../mpirun -np 8 -hostfile hosts nohup ../sander.MPI etc. etc.

The job start and I receive the output until the step number 300, in a 500
total steps. In that moment, I don't receive the output anymore, althougth
the top command show the sander.MPI run in the server and the node. Can
anyone have any idea about this??

Beste regards!!!

Prof. Dr. Moacyr Comar Junior
Universidade Federal de São João del Rei
Campus Centro-Oeste
Divinópolis - MG
AMBER mailing list
Received on Sat Jul 17 2010 - 12:30:03 PDT
Custom Search