hmmm strange I keep on getting the error
Users/greisen/amber11/bin/nab -c matextract.nab
/Users/greisen/amber11/bin/nab -o matextract matextract.o
/Users/greisen/amber11/bin/nab -c matgen.nab
/Users/greisen/amber11/bin/nab -o matgen matgen.o
Undefined symbols:
"_rfftw3d_f77_create_plan_", referenced from:
___rism_fft_MOD_fftw_make_plans in libnab.a(rism_fft.o)
___rism_fft_MOD_fftw_make_plans in libnab.a(rism_fft.o)
"_rfftwnd_f77_one_real_to_complex_", referenced from:
___rism_fft_MOD_rlft3i in libnab.a(rism_fft.o)
"_rfftwnd_f77_one_complex_to_real_", referenced from:
___rism_fft_MOD_rlft3i in libnab.a(rism_fft.o)
"_rfftwnd_f77_destroy_plan_", referenced from:
___rism3d_c_MOD_rism3d_destroy in libnab.a(rism3d_c.o)
___rism3d_c_MOD_rism3d_destroy in libnab.a(rism3d_c.o)
___rism3d_c_MOD_reallocbox in libnab.a(rism3d_c.o)
___rism3d_c_MOD_reallocbox in libnab.a(rism3d_c.o)
ld: symbol(s) not found
collect2: ld returned 1 exit status
cc failed!
I run these
make clean
sudo port install gcc44
sudo port install gcc_select
sudo gcc_select mp-gcc44
I have updated the gcc as suggested
gfortran -v
Using built-in specs.
Target: i386-apple-darwin9
Configured with: ../gcc-4.4.4/configure --prefix=/opt/local
--build=i386-apple-darwin9
--enable-languages=c,c++,objc,obj-c++,java,fortran
--libdir=/opt/local/lib/gcc44 --includedir=/opt/local/include/gcc44
--infodir=/opt/local/share/info --mandir=/opt/local/share/man
--with-local-prefix=/opt/local --with-system-zlib --disable-nls
--program-suffix=-mp-4.4
--with-gxx-include-dir=/opt/local/include/gcc44/c++/ --with-gmp=/opt/local
--with-mpfr=/opt/local --enable-stage1-checking
Thread model: posix
gcc version 4.4.4 (GCC)
Using built-in specs.
Target: i386-apple-darwin9
Configured with: ../gcc-4.4.4/configure --prefix=/opt/local
--build=i386-apple-darwin9
--enable-languages=c,c++,objc,obj-c++,java,fortran
--libdir=/opt/local/lib/gcc44 --includedir=/opt/local/include/gcc44
--infodir=/opt/local/share/info --mandir=/opt/local/share/man
--with-local-prefix=/opt/local --with-system-zlib --disable-nls
--program-suffix=-mp-4.4
--with-gxx-include-dir=/opt/local/include/gcc44/c++/ --with-gmp=/opt/local
--with-mpfr=/opt/local --enable-stage1-checking
Thread model: posix
gcc version 4.4.4 (GCC)
On Thu, Jul 8, 2010 at 1:14 PM, Jason Swails <jason.swails.gmail.com> wrote:
> Hello,
>
> You should be using the same version of gcc and gfortran. I think your
> version of gcc is too old, anyway. Try installing gcc-4.4 from macports or
> fink, and use those compilers instead. amberonmac.blogspot.com has
> instructions for how to do this.
>
> Good luck!
> Jason
>
> On Thu, Jul 8, 2010 at 6:42 AM, Jorgen Simonsen <jorgen589.gmail.com>
> wrote:
>
> > Hi
> >
> > I have followed the instructions on that homepage but I still get the
> same
> > error
> >
> > My gcc is gcc version 4.0.1 (Apple Inc. build 5493) and gfortran is gcc
> > version 4.2.3
> >
> > thanks in advance
> >
> > On Thu, Jul 8, 2010 at 2:58 AM, Jason Swails <jason.swails.gmail.com>
> > wrote:
> >
> > > Hello,
> > >
> > > What version of gcc and gfortran are you using? Did you read and
> follow
> > > the
> > > instructions for installing on amber on macs at
> > > http://amberonmac.blogspot.com/ ? If you follow those instructions
> and
> > > make
> > > sure you have the proper compilers (you should update with macports if
> > all
> > > you have is the version apple includes from xcode tools).
> > >
> > > Good luck!
> > > Jason
> > >
> > > On Wed, Jul 7, 2010 at 7:21 PM, Jorgen Simonsen <jorgen589.gmail.com>
> > > wrote:
> > >
> > > > Hi all,
> > > >
> > > > I am trying to compile ambertools on Mac OS leopard but i get this
> > error
> > > >
> > > > ld warning: for symbol _blk_green_ tentative definition of size 74096
> > > from
> > > > /Users/amber11/lib/libnab.a(pb_force.o) is is smaller than the real
> > > > definition of size 74088 from /Users/amber11/lib/libnab.a(pb_init.o)
> > > >
> > > > Undefined symbols:
> > > > "_rfftw3d_f77_create_plan_", referenced from:
> > > > ___rism_fft__fftw_make_plans in libnab.a(rism_fft.o)
> > > > ___rism_fft__fftw_make_plans in libnab.a(rism_fft.o)
> > > > "_rfftwnd_f77_one_real_to_complex_", referenced from:
> > > > ___rism_fft__rlft3i in libnab.a(rism_fft.o)
> > > > "_rfftwnd_f77_one_complex_to_real_", referenced from:
> > > > ___rism_fft__rlft3i in libnab.a(rism_fft.o)
> > > > "_rfftwnd_f77_destroy_plan_", referenced from:
> > > > ___rism3d_c__rism3d_destroy in libnab.a(rism3d_c.o)
> > > > ___rism3d_c__rism3d_destroy in libnab.a(rism3d_c.o)
> > > > ___rism3d_c__reallocbox in libnab.a(rism3d_c.o)
> > > > ___rism3d_c__reallocbox in libnab.a(rism3d_c.o)
> > > > ld: symbol(s) not found
> > > > collect2: ld returned 1 exit status
> > > > cc failed!
> > > > make[1]: *** [matgen] Error 1
> > > > make: *** [serial] Error 2
> > > >
> > > > Any help appreciated thanks in advance
> > > > _______________________________________________
> > > > AMBER mailing list
> > > > AMBER.ambermd.org
> > > > http://lists.ambermd.org/mailman/listinfo/amber
> > > >
> > >
> > >
> > >
> > > --
> > > Jason M. Swails
> > > Quantum Theory Project,
> > > University of Florida
> > > Ph.D. Graduate Student
> > > 352-392-4032
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Graduate Student
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Jul 08 2010 - 06:00:04 PDT
