Hi Bill,
[xiuchen.sw2123-06 leap]$ loadpdb
/home/xiuchen/Desktop/protonatedsingleprotein.pdb
loadpdb: Command not found.
[xiuchen.sw2123-06 leap]$
do you know what is the problem?
Thanks!
On Thu, Jul 1, 2010 at 1:19 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
> > Hi Bill, do I need to add the pdb file name of the protein with 19 H+ in
> > the command "addions my_mol Cl- 0"?
>
> leap> my_mol = loadpdb my_mol.pdb
> leap> addions my_mol Cl- 0
>
> 'my_mol' can be whatever string works for you.
>
> Bill
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jul 01 2010 - 12:00:03 PDT
