-------------------------------------------------------
          Amber 10 SANDER                              2008
          -------------------------------------------------------

| Run on 06/06/2010 at 14:48:47
  [-O]verwriting output

File Assignments:
|  MDIN: _MMPBSA_pb.mdin                                                       
| MDOUT: _MMPBSA_complex_pb.mdout                                              
|INPCRD: _MMPBSA_dummycomplex.inpcrd                                           
|  PARM: 2PRG_rosi_NW.prmtop                                                   
|RESTRT: restrt                                                                
|  REFC: refc                                                                  
| MDVEL: mdvel                                                                 
|  MDEN: mden                                                                  
| MDCRD: mdcrd                                                                 
|MDINFO: mdinfo                                                                
|INPDIP: inpdip                                                                
|RSTDIP: rstdip                                                                

|INPTRA: _MMPBSA_complex.mdcrd                                                 
|

 Here is the input file:

File generated by MMPBSA.py                                                    
 &cntrl                                                                        
   ntb=0, cut=999.0, nsnb=99999,                                               
   imin=5, maxcyc=0, cutcap=-1, xcap=0,                                        
   ycap=0, zcap=0, idecomp=0, ntpr=1,                                          
   ivcap=0, ntmin=2, igb=10,                                                   
 &pb                                                                           
   dbfopt=1, epsin=1, epsout=80, istrng=100.0,                                 
   radiopt=0, sprob=1.4, space=0.5, maxitn=1000, npopt=1                       
   cavity_surften=0.00542, cavity_offset=-1.008,                               
   fillratio=4,                                                                
 /                                                                             

--------------------------------------------------------------------------------
   1.  RESOURCE   USE: 
--------------------------------------------------------------------------------

| Flags:                                                                        
| New format PARM file being parsed.
| Version =    1.000 Date = 06/01/10 Time = 15:29:54
 NATOM  =    4682 NTYPES =      15 NBONH =    2376 MBONA  =    2346
 NTHETH =    5431 MTHETA =    3163 NPHIH =   10160 MPHIA  =    7918
 NHPARM =       0 NPARM  =       0 NNB   =   25948 NRES   =     285
 NBONA  =    2346 NTHETA =    3163 NPHIA =    7918 NUMBND =      52
 NUMANG =     106 NPTRA  =      45 NATYP =      39 NPHB   =       0
 IFBOX  =       0 NMXRS  =      44 IFCAP =       0 NEXTRA =       0
 NCOPY  =       0

 Implicit solvent radii are modified Bondi radii (mbondi)                                                   

|     Memory Use     Allocated
|     Real              300139
|     Hollerith          28379
|     Integer           263209
|     Max Pairs              1
|     nblistReal             0
|     nblist Int             0
|       Total             3483 kbytes
| Duplicated    0 dihedrals
| Duplicated    0 dihedrals

--------------------------------------------------------------------------------
   2.  CONTROL  DATA  FOR  THE  RUN
--------------------------------------------------------------------------------

                                                                                

General flags:
     imin    =       5, nmropt  =       0

Nature and format of input:
     ntx     =       1, irest   =       0, ntrx    =       1

Nature and format of output:
     ntxo    =       1, ntpr    =       1, ntrx    =       1, ntwr    =     500
     iwrap   =       0, ntwx    =       0, ntwv    =       0, ntwe    =       0
     ioutfm  =       0, ntwprt  =       0, idecomp =       0, rbornstat=      0

Potential function:
     ntf     =       1, ntb     =       0, igb     =      10, nsnb    =   99999
     ipol    =       0, gbsa    =       0, iesp    =       0
     dielc   =   1.00000, cut     = 999.00000, intdiel =   1.00000
     scnb    =   2.00000, scee    =   1.20000

Frozen or restrained atoms:
     ibelly  =       0, ntr     =       0

Energy minimization:
     maxcyc  =       0, ncyc    =      10, ntmin   =       2
     dx0     =   0.01000, drms    =   0.00010
|  INFO: Old style inpcrd file read


--------------------------------------------------------------------------------
   3.  ATOMIC COORDINATES AND VELOCITIES
--------------------------------------------------------------------------------

trajectory generated by ptraj                                                   
 begin time read from input coords =     0.000 ps

 Number of triangulated 3-point waters found:        0

--------------------------------------------------------------------------------
   4.  RESULTS
--------------------------------------------------------------------------------

 POST-PROCESSING OF TRAJECTORY ENERGIES
trajectory generated by ptraj                                                   
minimizing coord set #     1
 SA Bomb in sa_arc(): Allocation aborted 0 210 210 0 0