cd dmp && ./Run.dmp
../../exe/sander: Command not found.
  ./Run.dmp:  Program error
make[1]: [test.sander.BASIC.nopar] Error 1 (ignored)
cd adenine && ./Run.adenine
../../exe/sander: Command not found.
  ./Run.adenine:  Program error
make[1]: [test.sander.BASIC.nopar] Error 1 (ignored)
cd variable_14 && ./Run.variable_14_igb1
../../exe/sander: Command not found.
  ./Run.variable_14_igb1:  Program error
make[1]: [test.sander.BASIC.nopar] Error 1 (ignored)
cd cytosine && ./Run.cytosine
../../exe/sander: Command not found.
  ./Run.cytosine:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd nonper && ./Run.nonper
../../exe/sander: Command not found.
  ./Run.nonper:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd nonper && ./Run.nonper.belly
../../exe/sander: Command not found.
  ./Run.nonper.belly:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd nonper && ./Run.nonper.belly.mask
../../exe/sander: Command not found.
  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd nonper && ./Run.nonper.min
../../exe/sander: Command not found.
  ./Run.nonper.min:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd nonper && ./Run.cap
../../exe/sander: Command not found.
  ./Run.cap:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd nonper && ./Run.nonper.nocut
../../exe/sander: Command not found.
  ./Run.nonper.nocut:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd tip4p && ./Run.tip4p
../../exe/sander: Command not found.
  ./Run.tip4p:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd tip4p && ./Run.tip4p_nve
../../exe/sander: Command not found.
  ./Run.tip4p_nve:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd tip5p && ./Run.tip5p
../../exe/sander: Command not found.
  ./Run.tip5p:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd tip5p && ./Run.tip5p_nve
../../exe/sander: Command not found.
  ./Run.tip5p_nve:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd 4096wat && ./Run.pure_wat
../../exe/sander: Command not found.
  ./Run.pure_wat:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd 4096wat && ./Run.pure_wat_nmr_temp_reg
../../exe/sander: Command not found.
  ./Run.pure_wat_nmr_temp_reg:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd 4096wat && ./Run.vrand
../../exe/sander: Command not found.
  ./Run.vrand:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd 4096wat_oct && ./Run.pure_wat_oct
../../exe/sander: Command not found.
  ./Run.pure_wat_oct:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd dhfr && ./Run.dhfr
../../exe/sander: Command not found.
  ./Run.dhfr:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd dhfr && ./Run.dhfr.noboxinfo
cat: mdout.dhfr.noboxinfo: No such file or directory
diffing mdout.dhfr.noboxinfo.save with mdout.dhfr.noboxinfo
possible FAILURE:  check mdout.dhfr.noboxinfo.dif
==============================================================
cd dhfr && ./Run.dhfr.noshake
../../exe/sander: Command not found.
  ./Run.dhfr.noshake:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd dhfr && ./Run.dhfr.min
../../exe/sander: Command not found.
  ./Run.dhfr.min:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd dhfr && ./Run.dhfr.lmodxmin
../../exe/sander: Command not found.
  ./Run.dhfr.lmodxmin:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd variable_14 && ./Run.variable_14_ntb1
../../exe/sander: Command not found.
  ./Run.variable_14_ntb1:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd gact_ips && ./Run.ips
../../exe/sander: Command not found.
  ./Run.ips:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd gact_ips && ./Run.ipsnve
../../exe/sander: Command not found.
  ./Run.ipsnve:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd gact_ips && ./Run.ips_sgld
../../exe/sander: Command not found.
  ./Run.ips_sgld:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd gact_ips && ./Run.ips_dfft
../../exe/sander: Command not found.
  ./Run.ips_dfft:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd gact_ips && ./Run.ips_vacuum
../../exe/sander: Command not found.
  ./Run.ips_vacuum:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd polarizable_water && ./Run.pol_wat
../../exe/sander: Command not found.
  ./Run.pol_wat:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd ubiquitin && ./Run.ubiquitin
../../exe/sander: Command not found.
  ./Run.ubiquitin:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd dna_pol && ./Run.dna_pol
../../exe/sander: Command not found.
  ./Run.dna_pol:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd trx && ./Run.trx
../../exe/sander: Command not found.
  ./Run.trx:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd trx && ./Run.trx.cpln
../../exe/sander: Command not found.
  ./Run.trx.cpln:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd rdc && ./Run.dip
../../exe/sander: Command not found.
  ./Run.dip:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd rdc && ./Run.csa
../../exe/sander: Command not found.
  ./Run.csa:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd rdc && ./Run.csa_min
../../exe/sander: Command not found.
  ./Run.csa_min:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd pcsa && ./Run.dip
../../exe/sander: Command not found.
  ./Run.dip:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd pcsa && ./Run.csa
../../exe/sander: Command not found.
  ./Run.csa:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd pcsa && ./Run.csa2
../../exe/sander: Command not found.
  ./Run.csa2:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd pcsa && ./Run.csa_min
../../exe/sander: Command not found.
  ./Run.csa_min:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd tgtmd/change_target && ./Run.tgtmd
SANDER: Targeted MD with changing target
../../../exe/sander: Command not found.
  ./Run.tgtmd:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd tgtmd/change_target.rms && ./Run.tgtmd
SANDER: Targeted MD with changing target and fit/rmsd
        to different regions
../../../exe/sander: Command not found.
  ./Run.tgtmd:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd tgtmd/change_target.ntr && ./Run.tgtmd
SANDER: Targeted MD with changing target and restraints
../../../exe/sander: Command not found.
  ./Run.tgtmd:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd tgtmd/conserve_ene && ./Run.tgtmd
SANDER: Targeted MD energy conservation test
../../../exe/sander: Command not found.
  ./Run.tgtmd:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd tgtmd/minimize && ./Run.tgtmin
SANDER: Targeted minimization
../../../exe/sander: Command not found.
  ./Run.tgtmin:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd tgtmd/PME && ./Run.tgtPME
SANDER: Targeted MD with PME
../../../exe/sander: Command not found.
  ./Run.tgtPME:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd mtmdtest && ./Run.mtmdtest
SANDER: Multiply-targeted MD, new to AMBER 11
        Tested on an RNA duplex.
../../exe/sander: Command not found.
  ./Run.mtmdtest:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd trajene && ./Run.trajene
../../exe/sander: Command not found.
  ./Run.trajene:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd trajene_box && ./Run.trajene
../../exe/sander: Command not found.
  ./Run.trajene:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd trajene_netcdf && ./Run.trajene netcdf.mod
../../exe/sander: Command not found.
  ./Run.trajene:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd alp && ./Run.alp
../../exe/sander: Command not found.
  ./Run.alp:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd umbrella && ./Run.umbrella
../../exe/sander: Command not found.
  ./Run.umbrella:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd noesy && ./Run.noesy
../../exe/sander: Command not found.
  ./Run.noesy:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd jar && ./Run.jarz
../../exe/sander: Command not found.
  ./Run.jarz:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd plane_plane_restraint && ./Run.dinuc_plpt
SANDER: Dinucleoside restrained with new plane-point angle
        restraint that was defined with new natural 
        language restraint input.
../../exe/sander: Command not found.
  ./Run.dinuc_plpt:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd plane_plane_restraint && ./Run.dinuc_pln
SANDER: Dinucleoside restrained with new plane-plane angle
        restraint that was defined with new natural 
        language restraint input.
../../exe/sander: Command not found.
  ./Run.dinuc_pln:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd iwrap2 && ./Run.iwrap2
../../exe/sander: Command not found.
  ./Run.iwrap2:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd idecomp1 && ./run_idecomp1.sh
../../exe/sander: Command not found.
  ./run_idecomp1.sh:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd idecomp4 && ./run_idecomp4.sh
../../exe/sander: Command not found.
  ./run_idecomp4.sh:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd bintraj && ./Run.bintraj
../../exe/sander: Command not found.
  ./Run.bintraj:  Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
cd gb_rna && ./Run.gbrna
../../exe/sander: Command not found.
  ./Run.gbrna:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd gb_rna && ./Run.gbrna.min
../../exe/sander: Command not found.
  ./Run.gbrna.min:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd gb_rna && ./Run.gbrna.ln
../../exe/sander: Command not found.
  ./Run.gbrna.ln:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd gb_rna && ./Run.gbrna.ips
../../exe/sander: Command not found.
  ./Run.gbrna.ips:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd gb_rna && ./Run.gbrna.sgld
../../exe/sander: Command not found.
  ./Run.gbrna.sgld:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd gbsa_xfin && ./Run.gbsa
../../exe/sander: Command not found.
  ./Run.gbsa:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd circ_dna && ./Run.circdna
../../exe/sander: Command not found.
  ./Run.circdna:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd gb2_trx && ./Run.trxox
../../exe/sander: Command not found.
  ./Run.trxox:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd gb7_trx && ./Run.trxox
../../exe/sander: Command not found.
  ./Run.trxox:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd gb7_trx && ./Run.trxox_md
../../exe/sander: Command not found.
  ./Run.trxox_md:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd gb8_trx && ./Run.trxox
../../exe/sander: Command not found.
  ./Run.trxox:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd gb8_trx && ./Run.trxox_md
../../exe/sander: Command not found.
  ./Run.trxox_md:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd alpb_trx && ./Run.trxox
../../exe/sander: Command not found.
  ./Run.trxox:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd gb1_cox2 && ./Run.cox2
../../exe/sander: Command not found.
  ./Run.cox2:  Program error
make[1]: [test.sander.GB] Error 1 (ignored)
cd LES_noPME && ./Run.LESmd
SANDER: LES MD gas phase
../../exe/sander.LES: Command not found.
  ./Run.LESmd:  Program error
make[1]: [test.sander.LES] Error 1 (ignored)
cd LES_noPME && ./Run.LESmd.rdiel
SANDER: LES MD gas phase rdiel
../../exe/sander.LES: Command not found.
  ./Run.LESmd.rdiel:  Program error
make[1]: [test.sander.LES] Error 1 (ignored)
cd LES && ./Run.PME_LES
 
  Amber 8 ADDLES and SANDER.LES test: 
 
addles:
../../exe/addles: Command not found.
  ./Run.PME_LES:  Program error
make[1]: [test.sander.LES] Error 1 (ignored)
cd LES_CUT && ./Run.LES
 
  Amber 10 SANDER.LES test, no PME 
 
../../exe/sander.LES: Command not found.
  ./Run.LES:  Program error
make[1]: [test.sander.LES] Error 1 (ignored)
cd LES_TEMP && ./Run.2temp
SANDER: LES T coupling
../../exe/sander.LES: Command not found.
  ./Run.2temp:  Program error
make[1]: [test.sander.LES] Error 1 (ignored)
cd LES_GB && ./Run.LES
SANDER: LES+GB
1: GB/LES GB1 diffcoords
../../exe/sander.LES: Command not found.
  ./Run.LES:  Program error
make[1]: [test.sander.LES] Error 1 (ignored)
cd PIMD/part_pimd_water && ./Run.pimd
../../../exe/addles: Command not found.
diffing addles.out.save with addles.out
file ddtmp.addles.out is short
PASSED
==============================================================
../../../exe/sander.LES: Command not found.
  ./Run.pimd:  Program error
make[1]: [test.sander.PIMD.partial] Error 1 (ignored)
cd PIMD/part_nmpimd_water && ./Run.nmpimd
../../../exe/addles: Command not found.
../../../exe/sander.LES: Command not found.
  ./Run.nmpimd:  Program error
make[1]: [test.sander.PIMD.partial] Error 1 (ignored)
cd PIMD/part_pimd_helium && ./Run.pimd
../../../exe/sander.LES: Command not found.
  ./Run.pimd:  Program error
make[1]: [test.sander.PIMD.partial] Error 1 (ignored)
cd PIMD/part_nmpimd_helium && ./Run.nmpimd
../../../exe/sander.LES: Command not found.
  ./Run.nmpimd:  Program error
make[1]: [test.sander.PIMD.partial] Error 1 (ignored)
cd PIMD/part_nmpimd_ntp && ./Run.nmpimd
../../../exe/sander.LES: Command not found.
  ./Run.nmpimd:  Program error
make[1]: [test.sander.PIMD.partial] Error 1 (ignored)
cd PIMD/part_pimd_spcfw && ./Run.pimd
../../../exe/addles: Command not found.
  ./Run.pimd:  Program error
make[1]: [test.sander.PIMD.partial] Error 1 (ignored)
cd PIMD/part_cmd_water/equilib && ./Run.cmdyn
../../../../exe/addles: Command not found.
  ./Run.cmdyn:  Program error
make[1]: [test.sander.PIMD.partial] Error 1 (ignored)
cd PIMD/part_cmd_water/start && ./Run.cmdyn
../../../../exe/sander.LES: Command not found.
  ./Run.cmdyn:  Program error
make[1]: [test.sander.PIMD.partial] Error 1 (ignored)
cd PIMD/part_cmd_water/restart && ./Run.cmdyn
../../../../exe/sander.LES: Command not found.
  ./Run.cmdyn:  Program error
make[1]: [test.sander.PIMD.partial] Error 1 (ignored)
cd PIMD/part_rpmd_water && ./Run.rpmd
../../../exe/addles: Command not found.
  ./Run.rpmd:  Program error
make[1]: [test.sander.PIMD.partial] Error 1 (ignored)
cd ti_mass/pent_LES_PIMD && ./Run.pentadiene
../../../exe/addles: Command not found.
../../../exe/sander.LES: Command not found.
  ./Run.pentadiene:  Program error
make[1]: [test.sander.PIMD.partial] Error 1 (ignored)
cd amoeba_wat1 && ./Run.amoeba_wat1
../../exe/sander: Command not found.
  ./Run.amoeba_wat1:  Program error
make[1]: [test.sander.AMOEBA] Error 1 (ignored)
cd amoeba_wat2 && ./Run.amoeba_wat2
../../exe/sander: Command not found.
  ./Run.amoeba_wat2:  Program error
make[1]: [test.sander.AMOEBA] Error 1 (ignored)
cd amoeba_wat2 && ./Run.ntpverlet
../../exe/sander: Command not found.
  ./Run.ntpverlet:  Program error
make[1]: [test.sander.AMOEBA] Error 1 (ignored)
cd amoeba_gb1 && ./Run.amoeba_gb1
../../exe/sander: Command not found.
  ./Run.amoeba_gb1:  Program error
make[1]: [test.sander.AMOEBA] Error 1 (ignored)
cd amoeba_jac && ./Run.amoeba_jac
../../exe/sander: Command not found.
  ./Run.amoeba_jac:  Program error
make[1]: [test.sander.AMOEBA] Error 1 (ignored)
cd amoeba_formbox && ./Run.amoeba_formbox
../../exe/sander: Command not found.
  ./Run.amoeba_formbox:  Program error
make[1]: [test.sander.AMOEBA] Error 1 (ignored)
cd ncsu && ./run-serial.sh
>>>>>>> doing 'abmd_ANALYSIS'
 ** Error ** : '/Users/erikzuiderweg/AMBER_DIR/amber11/exe/sander' is not executable
>>>>>>> doing 'abmd_FLOODING'
 ** Error ** : '/Users/erikzuiderweg/AMBER_DIR/amber11/exe/sander' is not executable
>>>>>>> doing 'abmd_UMBRELLA'
 ** Error ** : '/Users/erikzuiderweg/AMBER_DIR/amber11/exe/sander' is not executable
>>>>>>> doing 'smd'
 ** Error ** : '/Users/erikzuiderweg/AMBER_DIR/amber11/exe/sander' is not executable
>>>>>>> doing 'pmd'
 ** Error ** : '/Users/erikzuiderweg/AMBER_DIR/amber11/exe/sander' is not executable
>>>>>>> doing 'smd2'
 ** Error ** : '/Users/erikzuiderweg/AMBER_DIR/amber11/exe/sander' is not executable
cd nmode && ./Run.ala-dipeptide
 
NMODE: find normal modes
../../exe/nmode: Command not found.
  ./Run.ala-dipeptide:  Program error
 
make[1]: [test.nmode] Error 1 (ignored)
cd nmode && ./Run.ala-dipeptide_rgroup
 
NMODE: find normal modes, with a restraint weighting
../../exe/nmode: Command not found.
  ./Run.ala-dipeptide_rgroup:  Program error
 
make[1]: [test.nmode] Error 1 (ignored)
cd newton_raph && ./Run.newton_raph
../../exe/nmode: Command not found.
  ./Run.newton_raph:  Program error
make[1]: [test.nmode] Error 1 (ignored)
cd sander_pbsa_dmp    && ./Run.dmp.min
../../exe/sander: Command not found.
  ./Run.dmp.min:  Program error
make[1]: [test.pbsa] Error 1 (ignored)
cd sander_pbsa_ipb2   && ./Run.110D.min
../../exe/sander: Command not found.
  ./Run.110D.min:  Program error
make[1]: [test.pbsa] Error 1 (ignored)
cd sander_pbsa_delphi && ./Run.1az6.min
../../exe/sander: Command not found.
  ./Run.1az6.min:  Program error
make[1]: [test.pbsa] Error 1 (ignored)
cd sander_pbsa_lpb    && ./Run.lsolver.min
../../exe/sander: Command not found.
  ./Run.lsolver.min:  Program error
make[1]: [test.pbsa] Error 1 (ignored)
cd sander_pbsa_radi   && ./Run.ion.min
../../exe/sander: Command not found.
  ./Run.ion.min:  Program error
make[1]: [test.pbsa] Error 1 (ignored)
cd sander_pbsa_tsr    && ./Run.tsrb.min
../../exe/sander: Command not found.
  ./Run.tsrb.min:  Program error
make[1]: [test.pbsa] Error 1 (ignored)
cd sander_pbsa_frc    && ./test
dbf_0.argasp
../../../../exe/sander: Command not found.
  ./Run.argasp.min:  Program error
dbf_0.dadt
../../../../exe/sander: Command not found.
  ./Run.dadt.min:  Program error
dbf_0.dgdc
../../../../exe/sander: Command not found.
  ./Run.dgdc.min:  Program error
dbf_0.lysasp
../../../../exe/sander: Command not found.
  ./Run.lysasp.min:  Program error
dbf_0.polyALA
../../../../exe/sander: Command not found.
  ./Run.polyALA.min:  Program error
dbf_0.polyAT
../../../../exe/sander: Command not found.
  ./Run.polyAT.min:  Program error
dbf_1.argasp
../../../../exe/sander: Command not found.
  ./Run.argasp.min:  Program error
dbf_1.dadt
../../../../exe/sander: Command not found.
  ./Run.dadt.min:  Program error
dbf_1.dgdc
../../../../exe/sander: Command not found.
  ./Run.dgdc.min:  Program error
dbf_1.lysasp
../../../../exe/sander: Command not found.
  ./Run.lysasp.min:  Program error
dbf_1.polyALA
../../../../exe/sander: Command not found.
  ./Run.polyALA.min:  Program error
dbf_1.polyAT
../../../../exe/sander: Command not found.
  ./Run.polyAT.min:  Program error
dbf_2.argasp
../../../../exe/sander: Command not found.
  ./Run.argasp.min:  Program error
dbf_2.dadt
../../../../exe/sander: Command not found.
  ./Run.dadt.min:  Program error
dbf_2.dgdc
../../../../exe/sander: Command not found.
  ./Run.dgdc.min:  Program error
dbf_2.lysasp
../../../../exe/sander: Command not found.
  ./Run.lysasp.min:  Program error
dbf_2.polyALA
../../../../exe/sander: Command not found.
  ./Run.polyALA.min:  Program error
dbf_2.polyAT
../../../../exe/sander: Command not found.
  ./Run.polyAT.min:  Program error
cd sander_pbsa_decres && ./Run.pbsa_decres
../../exe/sander: Command not found.
  ./Run.pbsa_decres:  Program error
make[1]: [test.pbsa] Error 1 (ignored)
cd sander_pbsa_decpw  && ./Run.pbsa_decpw
../../exe/sander: Command not found.
  ./Run.pbsa_decpw:  Program error
make[1]: [test.pbsa] Error 1 (ignored)
cd cnstph && ./Run.cnstph
../../exe/sander: Command not found.
  ./Run.cnstph:  Program error
make[1]: *** [test.sander.constph] Error 1
cd mmpbsa_py && ./Run
sander is needed for MMPBSA.py
make[1]: *** [test.mmpbsa_py] Error 1
cd ../src/mm_pbsa/Examples && ./Run.mmpbsa.test
CALCULATING TEST: 01_GenerateSnapshots
  ./Run.mmpbsa.test:  Program error
make[1]: *** [test.mm_pbsa] Error 1
cd qmmm2/input_validation && ./Run.invalid_atom_ids
../../../exe/sander: Command not found.
  ./Run.invalid_atom_ids:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/input_validation && ./Run.non_unique_qm_atoms
../../../exe/sander: Command not found.
  ./Run.non_unique_qm_atoms:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma
../../../exe/sander: Command not found.
  ./Run.nma:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma_md
../../../exe/sander: Command not found.
  ./Run.nma_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma_md_diag_routine_0
../../../exe/sander: Command not found.
  ./Run.nma_md_diag_routine_0:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma_md_diag_routine_2
../../../exe/sander: Command not found.
  ./Run.nma_md_diag_routine_2:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma_md_diag_routine_3
../../../exe/sander: Command not found.
  ./Run.nma_md_diag_routine_3:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma_md_diag_routine_4
../../../exe/sander: Command not found.
  ./Run.nma_md_diag_routine_4:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma_md_diag_routine_5
../../../exe/sander: Command not found.
  ./Run.nma_md_diag_routine_5:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma_md_diag_routine_6
../../../exe/sander: Command not found.
  ./Run.nma_md_diag_routine_6:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma_md_diag_routine_7
../../../exe/sander: Command not found.
  ./Run.nma_md_diag_routine_7:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma_md_qmgb0
../../../exe/sander: Command not found.
  ./Run.nma_md_qmgb0:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma_md_qmgb1
../../../exe/sander: Command not found.
  ./Run.nma_md_qmgb1:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma_md_qmgb2
../../../exe/sander: Command not found.
  ./Run.nma_md_qmgb2:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma_md_qmgb2_saltcon
../../../exe/sander: Command not found.
  ./Run.nma_md_qmgb2_saltcon:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.nma_md_qmgb3
../../../exe/sander: Command not found.
  ./Run.nma_md_qmgb3:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD && ./Run.C6H4FCL_md
../../../exe/sander: Command not found.
  ./Run.C6H4FCL_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_shake && ./Run.nma_md
../../../exe/sander: Command not found.
  ./Run.nma_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_tight_p && ./Run.nma
../../../exe/sander: Command not found.
  ./Run.nma:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_tight_p && ./Run.nma_md
../../../exe/sander: Command not found.
  ./Run.nma_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_PDDGPM3 && ./Run.nma
../../../exe/sander: Command not found.
  ./Run.nma:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_PDDGPM3 && ./Run.nma_md
../../../exe/sander: Command not found.
  ./Run.nma_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_PDDGPM3 && ./Run.C6H4FCL_md
../../../exe/sander: Command not found.
  ./Run.C6H4FCL_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_PDDGPM3_08 && ./Run.nma
../../../exe/sander: Command not found.
  ./Run.nma:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_PDDGPM3_08 && ./Run.nma_md
../../../exe/sander: Command not found.
  ./Run.nma_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_PDDGMNDO && ./Run.nma
../../../exe/sander: Command not found.
  ./Run.nma:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_PDDGMNDO && ./Run.nma_md
../../../exe/sander: Command not found.
  ./Run.nma_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_PDDGMNDO && ./Run.C6H4FCL_md
../../../exe/sander: Command not found.
  ./Run.C6H4FCL_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_AM1 && ./Run.nma
../../../exe/sander: Command not found.
  ./Run.nma:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_AM1 && ./Run.nma_md
../../../exe/sander: Command not found.
  ./Run.nma_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_AM1 && ./Run.C6H4FCL_md
../../../exe/sander: Command not found.
  ./Run.C6H4FCL_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_AM1_ADDMM && ./Run.nma
../../../exe/sander: Command not found.
  ./Run.nma:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_AM1_ADDMM && ./Run.nma_md
../../../exe/sander: Command not found.
  ./Run.nma_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_RM1 && ./Run.nma
../../../exe/sander: Command not found.
  ./Run.nma:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_RM1 && ./Run.nma_md
../../../exe/sander: Command not found.
  ./Run.nma_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_RM1 && ./Run.C6H4FCL_md
../../../exe/sander: Command not found.
  ./Run.C6H4FCL_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_MNDO && ./Run.nma
../../../exe/sander: Command not found.
  ./Run.nma:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_MNDO && ./Run.nma_md
../../../exe/sander: Command not found.
  ./Run.nma_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_MNDO && ./Run.C6H4FCL_md
../../../exe/sander: Command not found.
  ./Run.C6H4FCL_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_NUMER_DERIV && ./Run.nma
../../../exe/sander: Command not found.
  ./Run.nma:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_NUMER_DERIV && ./Run.nma_md
../../../exe/sander: Command not found.
  ./Run.nma_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_NUMER_DERIV && ./Run.nma_md_qmgb0
../../../exe/sander: Command not found.
  ./Run.nma_md_qmgb0:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_NUMER_DERIV && ./Run.nma_md_qmgb2
../../../exe/sander: Command not found.
  ./Run.nma_md_qmgb2:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/pure_QM_MD_NUMER_DERIV && ./Run.nma_md_qmgb2_saltcon
../../../exe/sander: Command not found.
  ./Run.nma_md_qmgb2_saltcon:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/1-2-ethanediol_PM3CARB1 && ./Run.PM3CARB1_md
../../../exe/sander: Command not found.
  ./Run.PM3CARB1_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3 && ./Run.lysine
../../../exe/sander: Command not found.
  ./Run.lysine:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3 && ./Run.lysine_md
../../../exe/sander: Command not found.
  ./Run.lysine_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3 && ./Run.lysine_md_qmmm_int0
../../../exe/sander: Command not found.
  ./Run.lysine_md_qmmm_int0:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3 && ./Run.lysine_md_qmmm_int2
../../../exe/sander: Command not found.
  ./Run.lysine_md_qmmm_int2:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3 && ./Run.lysine_md_lnk_dis_neg
../../../exe/sander: Command not found.
  ./Run.lysine_md_lnk_dis_neg:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3 && ./Run.lysine_md_lnk_method2
../../../exe/sander: Command not found.
  ./Run.lysine_md_lnk_method2:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3_qmgb0 && ./Run.lysine
../../../exe/sander: Command not found.
  ./Run.lysine:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3_qmgb0 && ./Run.lysine_md
../../../exe/sander: Command not found.
  ./Run.lysine_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3_qmgb2 && ./Run.lysine
../../../exe/sander: Command not found.
  ./Run.lysine:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3_qmgb2 && ./Run.lysine_md
../../../exe/sander: Command not found.
  ./Run.lysine_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3_qmgb2 && ./Run.lysine_md_igb2
../../../exe/sander: Command not found.
  ./Run.lysine_md_igb2:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3_qmgb2 && ./Run.lysine_md_igb5
../../../exe/sander: Command not found.
  ./Run.lysine_md_igb5:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3_qmgb2 && ./Run.lysine_md_igb7
../../../exe/sander: Command not found.
  ./Run.lysine_md_igb7:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3_qmgb2 && ./Run.lysine_md_adjust_q1
../../../exe/sander: Command not found.
  ./Run.lysine_md_adjust_q1:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3_qmgb2 && ./Run.lysine_md_adjust_q2
../../../exe/sander: Command not found.
  ./Run.lysine_md_adjust_q2:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3_qmgb2 && ./Run.lysine_md_lnk_dis_neg
../../../exe/sander: Command not found.
  ./Run.lysine_md_lnk_dis_neg:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3_qmgb2_alpb && ./Run.lysine_md
../../../exe/sander: Command not found.
  ./Run.lysine_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3_calc_mulliken && ./Run.lysine
../../../exe/sander: Command not found.
  ./Run.lysine:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_PM3_calc_mulliken && ./Run.lysine_md
../../../exe/sander: Command not found.
  ./Run.lysine_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_AM1 && ./Run.lysine
../../../exe/sander: Command not found.
  ./Run.lysine:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_AM1 && ./Run.lysine_md
../../../exe/sander: Command not found.
  ./Run.lysine_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_MNDO && ./Run.lysine
../../../exe/sander: Command not found.
  ./Run.lysine:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/lysine_MNDO && ./Run.lysine_md
../../../exe/sander: Command not found.
  ./Run.lysine_md:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/PM3-MMX && ./Run.water_dimer.x
../../../exe/sander: Command not found.
  ./Run.water_dimer.x:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/PM3-MMX && ./Run.ammonia_dimer.x
../../../exe/sander: Command not found.
  ./Run.ammonia_dimer.x:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/PM3-MMX && ./Run.formic_acid_dimer.x
../../../exe/sander: Command not found.
  ./Run.formic_acid_dimer.x:  Program error
make[1]: [test.sander.QMMM.nopar] Error 1 (ignored)
cd qmmm2/xcrd_build_test/ && ./Run.oct_nma_imaged
../../../exe/sander: Command not found.
  ./Run.oct_nma_imaged:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/xcrd_build_test/ && ./Run.oct_nma_noimage
../../../exe/sander: Command not found.
  ./Run.oct_nma_noimage:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/xcrd_build_test/ && ./Run.ortho_qmewald0
../../../exe/sander: Command not found.
  ./Run.ortho_qmewald0:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/xcrd_build_test/ && ./Run.truncoct_qmewald0
../../../exe/sander: Command not found.
  ./Run.truncoct_qmewald0:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/crambin_2 && ./Run.crambin
../../../exe/sander: Command not found.
  ./Run.crambin:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/crambin_2 && ./Run.crambin_md
../../../exe/sander: Command not found.
  ./Run.crambin_md:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/crambin_2 && ./Run.crambin_md_calc_mulliken
../../../exe/sander: Command not found.
  ./Run.crambin_md_calc_mulliken:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/crambin_2 && ./Run.crambin_md_qmgb2
../../../exe/sander: Command not found.
  ./Run.crambin_md_qmgb2:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/crambin_2 && ./Run.crambin_md_qmgb2_alpb
../../../exe/sander: Command not found.
  ./Run.crambin_md_qmgb2_alpb:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/crambin_2 && ./Run.crambin_md_qmgb2_aq1
../../../exe/sander: Command not found.
  ./Run.crambin_md_qmgb2_aq1:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/crambin_2 && ./Run.crambin_md_qmgb2_aq2
../../../exe/sander: Command not found.
  ./Run.crambin_md_qmgb2_aq2:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/crambin_2 && ./Run.crambin_md_qmgb2_saltcon
../../../exe/sander: Command not found.
  ./Run.crambin_md_qmgb2_saltcon:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_internal
../../../exe/sander: Command not found.
  ./Run.1NLN_internal:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_dspev
../../../exe/sander: Command not found.
  ./Run.1NLN_dspev:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_dspevd
../../../exe/sander: Command not found.
  ./Run.1NLN_dspevd:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_dspevx
../../../exe/sander: Command not found.
  ./Run.1NLN_dspevx:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_dsyev
../../../exe/sander: Command not found.
  ./Run.1NLN_dsyev:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_dsyevd
../../../exe/sander: Command not found.
  ./Run.1NLN_dsyevd:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_dsyevr
../../../exe/sander: Command not found.
  ./Run.1NLN_dsyevr:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_auto
../../../exe/sander: Command not found.
  ./Run.1NLN_auto:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_min
../../../exe/sander: Command not found.
  ./Run.1NLN_min:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1
../../../exe/sander: Command not found.
  ./Run.1NLN_MD_ntb1:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_aq1
../../../exe/sander: Command not found.
  ./Run.1NLN_MD_ntb1_aq1:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_aq2
../../../exe/sander: Command not found.
  ./Run.1NLN_MD_ntb1_aq2:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_mmcorr
../../../exe/sander: Command not found.
  ./Run.1NLN_MD_ntb1_mmcorr:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_qmewald2
../../../exe/sander: Command not found.
  ./Run.1NLN_MD_ntb1_qmewald2:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb2
../../../exe/sander: Command not found.
  ./Run.1NLN_MD_ntb2:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_aq2_NUMER_DERIV
../../../exe/sander: Command not found.
  ./Run.1NLN_MD_ntb1_aq2_NUMER_DERIV:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_lnk_dis_neg
../../../exe/sander: Command not found.
  ./Run.1NLN_MD_ntb1_lnk_dis_neg:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_lnk_method2
../../../exe/sander: Command not found.
  ./Run.1NLN_MD_ntb1_lnk_method2:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.notimaged
../../../exe/sander: Command not found.
  ./Run.notimaged:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.notimaged_md
../../../exe/sander: Command not found.
  ./Run.notimaged_md:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.notimaged_md_pme
../../../exe/sander: Command not found.
  ./Run.notimaged_md_pme:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.notimaged_md_pme_qmewald
../../../exe/sander: Command not found.
  ./Run.notimaged_md_pme_qmewald:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.notimaged_md_pme_qmewald_lowmem
../../../exe/sander: Command not found.
  ./Run.notimaged_md_pme_qmewald_lowmem:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.imaged
../../../exe/sander: Command not found.
  ./Run.imaged:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.imaged_md
../../../exe/sander: Command not found.
  ./Run.imaged_md:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.img_center
../../../exe/sander: Command not found.
  ./Run.img_center:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.img_center_md
../../../exe/sander: Command not found.
  ./Run.img_center_md:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.img_center_bigqmcut_md
../../../exe/sander: Command not found.
  ./Run.img_center_bigqmcut_md:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/crambin && ./Run.crambin
../../../exe/sander: Command not found.
  ./Run.crambin:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/crambin && ./Run.crambin_md_hot_start
../../../exe/sander: Command not found.
  ./Run.crambin_md_hot_start:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/crambin && ./Run.crambin_md
../../../exe/sander: Command not found.
  ./Run.crambin_md:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/tip3p_cap && ./Run.tip3p_cap
../../../exe/sander: Command not found.
  ./Run.tip3p_cap:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/tip3p_cap && ./Run.tip3p_cap_md
../../../exe/sander: Command not found.
  ./Run.tip3p_cap_md:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/tip3p_cap && ./Run.tip3p_cap_md.shake
../../../exe/sander: Command not found.
  ./Run.tip3p_cap_md.shake:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/tip3p_cap && ./Run.tip3p_cap_md.shake_qmshakeoff
../../../exe/sander: Command not found.
  ./Run.tip3p_cap_md.shake_qmshakeoff:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_qmcut && ./Run.MG_QM_water_MM
../../../exe/sander: Command not found.
  ./Run.MG_QM_water_MM:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_qmcut && ./Run.MG_QM_water_MM_MD
../../../exe/sander: Command not found.
  ./Run.MG_QM_water_MM_MD:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_qmcut_lowmem && ./Run.MG_QM_water_MM_MD
../../../exe/sander: Command not found.
  ./Run.MG_QM_water_MM_MD:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_qmcut_ADDMM && ./Run.MG_QM_water_MM
../../../exe/sander: Command not found.
  ./Run.MG_QM_water_MM:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/MG_QM_water_MM_AM1_qmcut_ADDMM && ./Run.MG_QM_water_MM_MD
../../../exe/sander: Command not found.
  ./Run.MG_QM_water_MM_MD:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/variable_solvent && ./Run.mg_periodic_vsolv_wat
../../../exe/sander: Command not found.
  ./Run.mg_periodic_vsolv_wat:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/variable_solvent && ./Run.1NLN_MD_ntb1_vsolv
../../../exe/sander: Command not found.
  ./Run.1NLN_MD_ntb1_vsolv:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm2/PM3-MMX && ./Run.crambin_md_pm3mmx
../../../exe/sander: Command not found.
  ./Run.crambin_md_pm3mmx:  Program error
make[1]: [test.sander.QMMM] Error 1 (ignored)
cd qmmm_DFTB/pure_QM_MD_DFTB && ./Run.nma
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/pure_QM_MD_DFTB && ./Run.nma_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/pure_QM_MD_DFTB && ./Run.nma_md_qmgb0
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/pure_QM_MD_DFTB && ./Run.nma_md_qmgb1
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/pure_QM_MD_DFTB && ./Run.nma_md_qmgb2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/pure_QM_MD_DFTB && ./Run.nma_md_qmgb2_saltcon
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/pure_QM_MD_DFTB && ./Run.nma_disp
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/pure_QM_MD_shake_DFTB && ./Run.nma_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/pure_QM_MD_tight_p_DFTB && ./Run.nma
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/pure_QM_MD_tight_p_DFTB && ./Run.nma_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB && ./Run.lysine
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB && ./Run.lysine_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB && ./Run.lysine_md_lnk_dis_neg
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB && ./Run.lysine_md_lnk_method2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB && ./Run.lysine_md_qmmm_int0
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB_qmgb0 && ./Run.lysine
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB_qmgb0 && ./Run.lysine_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB_qmgb2 && ./Run.lysine
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB_qmgb2 && ./Run.lysine_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB_qmgb2 && ./Run.lysine_md_igb2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB_qmgb2 && ./Run.lysine_md_igb5
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB_qmgb2 && ./Run.lysine_md_igb7
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB_qmgb2 && ./Run.lysine_md_adjust_q1
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB_qmgb2 && ./Run.lysine_md_adjust_q2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB_qmgb2_alpb && ./Run.lysine_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB_calc_mulliken && ./Run.lysine
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/lysine_DFTB_calc_mulliken && ./Run.lysine_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/3rd-order/ala8  && ./Run.ala8_PA
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/3rd-order/ala8  && ./Run.ala8_PR
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/3rd-order/water && ./Run.water
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/3rd-order/water && ./Run.water_read_mdin
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/3rd-order/water && ./Run.water_read_file
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/crambin_DFTB && ./Run.crambin
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/crambin_DFTB && ./Run.crambin_md_hot_start
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/crambin_DFTB && ./Run.crambin_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md_calc_mulliken
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md_qmgb2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md_qmgb2_alpb
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md_qmgb2_aq1
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md_qmgb2_aq2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md_qmgb2_saltcon
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_ewald_ntb1
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_ewald_ntb1_link_atoms
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_ewald_ntb1_qmewald2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_ewald_ntb2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb1
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb2_link_atoms
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb2_link_atoms_aq1
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb2_link_atoms_aq2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb2_qmewald2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb2_telec
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/MG_QM_water_MM_DFTB_qmcut && ./Run.MG_QM_water_MM
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/MG_QM_water_MM_DFTB_qmcut && ./Run.MG_QM_water_MM_MD
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.notimaged
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.notimaged_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.notimaged_md_pme
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.notimaged_md_pme_qmewald
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.imaged
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.imaged_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.img_center
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.img_center_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.img_center_bigqmcut_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/MG_QM_water_MM_DFTB_qmcut_lowmem && ./Run.MG_QM_water_MM_MD
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/tip3p_cap_DFTB && ./Run.tip3p_cap
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/tip3p_cap_DFTB && ./Run.tip3p_cap_md
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/tip3p_cap_DFTB && ./Run.tip3p_cap_md.shake
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/tip3p_cap_DFTB && ./Run.tip3p_cap_md.shake_qmshakeoff
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_min
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1_lnk_dis_neg
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1_lnk_method2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1_aq1
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1_aq1_disp
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1_aq2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1_qmewald2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb2
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/3rd-order/ala8 && ./Run.ala8_PA
DFTB SLKO files not found - Skipping Test...

cd qmmm_DFTB/3rd-order/ala8 && ./Run.ala8_PR
DFTB SLKO files not found - Skipping Test...

export TESTsander='../../exe/pmemd'; cd 4096wat && ./Run.pure_wat
../../exe/pmemd: Command not found.
  ./Run.pure_wat:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd 4096wat && ./Run.pure_wat_nmr_temp_reg
../../exe/pmemd: Command not found.
  ./Run.pure_wat_nmr_temp_reg:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd 4096wat && ./Run.vrand
../../exe/pmemd: Command not found.
  ./Run.vrand:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd 4096wat_oct && ./Run.pure_wat_oct
../../exe/pmemd: Command not found.
  ./Run.pure_wat_oct:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd alp && ./Run.alp
../../exe/pmemd: Command not found.
  ./Run.alp:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd cytosine && ./Run.cytosine
../../exe/pmemd: Command not found.
  ./Run.cytosine:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd dhfr && ./Run.dhfr
../../exe/pmemd: Command not found.
  ./Run.dhfr:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd dhfr && ./Run.dhfr.min
../../exe/pmemd: Command not found.
  ./Run.dhfr.min:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd dhfr && ./Run.dhfr.noshake
../../exe/pmemd: Command not found.
  ./Run.dhfr.noshake:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd variable_14 && ./Run.variable_14_ntb1
../../exe/pmemd: Command not found.
  ./Run.variable_14_ntb1:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd variable_14 && ./Run.variable_14_igb1
../../exe/pmemd: Command not found.
  ./Run.variable_14_igb1:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd trx && ./Run.trx
../../exe/pmemd: Command not found.
  ./Run.trx:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd trx && ./Run.trx.cpln.pmemd
../../exe/pmemd: Command not found.
  ./Run.trx.cpln.pmemd:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd gb_rna && ./Run.gbrna
../../exe/pmemd: Command not found.
  ./Run.gbrna:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd gb_rna && ./Run.gbrna.min
../../exe/pmemd: Command not found.
  ./Run.gbrna.min:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd gb_rna && ./Run.gbrna.ln
../../exe/pmemd: Command not found.
  ./Run.gbrna.ln:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd circ_dna && ./Run.circdna
../../exe/pmemd: Command not found.
  ./Run.circdna:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd gb2_trx && ./Run.trxox.nogbsa
../../exe/pmemd: Command not found.
  ./Run.trxox.nogbsa:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd gb7_trx && ./Run.trxox_md
../../exe/pmemd: Command not found.
  ./Run.trxox_md:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd alpb_trx && ./Run.trxox.nogbsa
../../exe/pmemd: Command not found.
  ./Run.trxox.nogbsa:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd gb1_cox2 && ./Run.cox2
../../exe/pmemd: Command not found.
  ./Run.cox2:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd tip4p && ./Run.tip4p
../../exe/pmemd: Command not found.
  ./Run.tip4p:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd tip4p && ./Run.tip4p_nve
../../exe/pmemd: Command not found.
  ./Run.tip4p_nve:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd tip5p && ./Run.tip5p
../../exe/pmemd: Command not found.
  ./Run.tip5p:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../exe/pmemd'; cd tip5p && ./Run.tip5p_nve
../../exe/pmemd: Command not found.
  ./Run.tip5p_nve:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../../../exe/pmemd'; cd chamber/md_engine/dhfr && ./Run.dhfr_charmm.min
../../../../exe/pmemd: Command not found.
  ./Run.dhfr_charmm.min:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../../../exe/pmemd'; cd chamber/md_engine/dhfr && ./Run.dhfr_charmm.md
../../../../exe/pmemd: Command not found.
  ./Run.dhfr_charmm.md:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../../../exe/pmemd'; cd chamber/md_engine/dhfr_cmap && ./Run.dhfr_charmm.md
../../../../exe/pmemd: Command not found.
  ./Run.dhfr_charmm.md:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../../../exe/pmemd'; cd chamber/md_engine/dhfr_cmap && ./Run.dhfr_charmm.md
../../../../exe/pmemd: Command not found.
  ./Run.dhfr_charmm.md:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../../../exe/pmemd'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm_noshake.min
../../../../exe/pmemd: Command not found.
  ./Run.dhfr_cmap_pbc_charmm_noshake.min:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../../../exe/pmemd'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm_noshake.md
../../../../exe/pmemd: Command not found.
  ./Run.dhfr_cmap_pbc_charmm_noshake.md:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../../../exe/pmemd'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm.min
../../../../exe/pmemd: Command not found.
  ./Run.dhfr_cmap_pbc_charmm.min:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)
export TESTsander='../../../../exe/pmemd'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm.md
../../../../exe/pmemd: Command not found.
  ./Run.dhfr_cmap_pbc_charmm.md:  Program error
make[1]: [test.serial.pmemd] Error 1 (ignored)

Finished serial test suite for Amber 11 at Mon May 17 17:04:51 EDT 2010.

make[1]: Target `test.serial' not remade because of errors.
       1 file comparison passed
       1 file comparison failed
     564 tests experienced errors