[AMBER] a possible typo bug while building pmemd with mpi

From: Alan <alanwilter.gmail.com>
Date: Thu, 29 Apr 2010 16:18:29 +0100

Hi there,

So compilation of Amber11 with mpi was going fine and the I got this:

mpif90 -opmemd gbl_constants.o gbl_datatypes.o state_info.o file_io_dat.o
mdin_ctrl_dat.o mdin_ewald_dat.o mdin_debugf_dat.o prmtop_dat.o inpcrd_dat.o
dynamics_dat.o img.o parallel_dat.o parallel.o gb_parallel.o pme_direct.o
pme_recip_dat.o pme_slab_recip.o pme_blk_recip.o pme_slab_fft.o
pme_blk_fft.o pme_fft_dat.o fft1d.o bspline.o pme_force.o pbc.o
nb_pairlist.o nb_exclusions.o cit.o dynamics.o bonds.o angles.o dihedrals.o
extra_pnts_nb14.o runmd.o loadbal.o shake.o prfs.o mol_list.o runmin.o
constraints.o axis_optimize.o gb_ene.o veclib.o gb_force.o timers.o
pmemd_lib.o runfiles.o file_io.o bintraj.o pmemd_clib.o pmemd.o random.o
degcnt.o erfcfun.o nmr_calls.o nmr_lib.o get_cmdline.o master_setup.o
pme_alltasks_setup.o pme_setup.o ene_frc_splines.o gb_alltasks_setup.o
nextprmtop_section.o angles_ub.o dihedrals_imp.o cmap.o charmm.o
charmm_gold.o ../../netcdf/lib/libnetcdf.a
ld: unknown option: -opmemd
collect2: ld returned 1 exit status
make: *** [pmemd] Error 1

Clearly is should be:
mpif90 -o pmemd gbl_constants.o ...

and when do this by hand all goes fine. But, trying to pinpoint the error
was very challenging for me so I could solve that.


Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate
Department of Biochemistry, University of Cambridge.
80 Tennis Court Road, Cambridge CB2 1GA, UK.
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Received on Thu Apr 29 2010 - 08:30:05 PDT
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