[AMBER] question about cluster analysis

From: Jianing <song_jianing_hi.126.com>
Date: Wed, 28 Apr 2010 11:01:11 +0800 (CST)

Dear all,
when do cluster analysis following Tutorial B4, I encounter the problem:
kclust -mode rmsd -centroid -cdist -heavy -lsqfit -radius 6 -maxerr 1 -iterate ../clustfils > ../Centroid_6
after I execute the above commamd line,the Centroid_6 file has 268 clusters,not just six clusters. I don't know where the problem comes from. I just follow the tutorial strictly, even don't change filenames.
Can someone give me some help?
Thank you very much.

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Received on Tue Apr 27 2010 - 20:30:03 PDT
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