[AMBER] Simulation of complex

From: Asfa Ali <asfa.iisc.gmail.com>
Date: Mon, 19 Apr 2010 20:52:17 +0530


I am having a docked complex (from Autodock) of a ligand and DNA. The docked
file is not recognised by amber, although I am using antechamber to create
the mol2 and frcmod file of the ligand separately.

Is there any problem with Autodock? Can anyone tell me how to use docked
file from Autodock for simulation in amber?

I have checked the Amber mailing list but I didn't get any suitable results.

Kindly help.

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Received on Mon Apr 19 2010 - 08:30:05 PDT
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