[AMBER] analysis for solvation effect for protein

From: Yunfen Wang <wangfen041237.163.com>
Date: Sat, 17 Apr 2010 16:21:14 +0800 (CST)

Dear users,
 I have done MD simulation in order to study the solvation effect for protein . Firstly, I solvate the protein with different solvent , then minimize the system, heat it and equilibrate for 1 ns .
Now , i should analyze , Is there Anyone who has done the research of solvation effect ? Can you instruct me what parameters should I study ? I will appreciate your detail introduction very much .
Thank you

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Received on Sat Apr 17 2010 - 01:30:03 PDT
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