[AMBER] Unit of analyze modes with ptraj

From: Samuel Genheden <samuel.genheden.gmail.com>
Date: Thu, 15 Apr 2010 20:22:21 +0200


I have a question regarding the analyze mode command in ptraj

I have done a normal mode analysis with nmode and dumped the normal
modes to a file. I then analyzed the modes with ptraj using

trajin lac.pdb
analyze modes displ file vecs end 6690 out ptraj.out

where vecs are the file from nmode.

My question is: what are the units of the displacements in the output file?

Best regards,

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Received on Thu Apr 15 2010 - 11:30:04 PDT
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