Re: [AMBER] Regarding parameter files of dna-lig complex

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Tue, 13 Apr 2010 10:01:14 -0700 (PDT)

> WARNING: There is a bond of 7.153070 angstroms between:
> ------- .R<DA 308>.A<C6 18> and .R<DA 308>.A<N1 22>
> ...

This could be a result of a bad pdb format that has one or more
xyz column being mis-read.

> FATAL: Atom .R<LIG 1>.A<C 1> does not have a type.

See the demos that concern parameterizing ligands.

Bill

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Received on Tue Apr 13 2010 - 10:30:03 PDT
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