Dnia wtorek 06 kwiecień 2010, case napisał:
> On Tue, Apr 06, 2010, Zuzanna K. Ścigacz wrote:
> > > > I am recently trying to install amber 10 on Xeon emt64t Linux machine
> > > > using gcc/gfortran compilers, and I am receiving a following error
> > >
> > > > message while linking sander:
> > > ambsecond_ should be in amber10/src/lib/sys.o.
> >
> > nm shows that sys.o doesn't have such a symbol.
> >
> > [r25] ~/amber10/src/lib > nm sys.o | grep ambsecond
> > [r25] ~/reef/amber10/src/lib >
>
> Weird. What arguments did you use for configure_amber?
I used simply ./configure_amber gfortran
> Look at your
> config_amber.h file: is there a '-Dsecond=ambsecond' phrase in there?
[r25] ~/amber10/src > cat config_amber.h | grep ambsecond
FPPFLAGS= -P -xassembler-with-cpp -Dsecond=ambsecond -DBINTRAJ
$(AMBERBUILDFLAGS)
[r25] ~/amber10/src > cat config.h | grep ambsecond
[r25] ~/amber10/src >
> If you go to amber10/src/lib and type 'make -n sys.o', what do you get?
[r25] ~/amber10/src/lib > make -n sys.o
make: `sys.o' is up to date.
[r25] ~/amber10/src/lib >
Regards.
--
Zuzanna K. Ścigacz
HPC Systems Administrator
Poznan Supercomputing and Networking Center
Institute of Bioorganic Chemistry Polish Academy od Sciences
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Received on Tue Apr 06 2010 - 05:30:03 PDT
