Re: [AMBER] rna simulation

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Mon, 5 Apr 2010 10:32:50 -0700 (PDT)

> Created a new atom named: HO'5 within residue: .R<RU5 13>
> Created a new atom named: HO'3 within residue: .R<RU3 24>
> ...
> FATAL: Atom .R<RU5 1>.A<HO'5 29> does not have a type.
> FATAL: Atom .R<RU3 12>.A<HO'3 32> does not have a type.

These atoms are mis-named for Amber - find the correct names
('desc RU5') and fix them in pdb.

Bill

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Received on Mon Apr 05 2010 - 11:00:02 PDT
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