[AMBER] Problems during AMBER 10 compilation.

From: Zuzanna K. Scigacz <platyna.man.poznan.pl>
Date: Thu, 1 Apr 2010 14:10:16 +0200

Dear All

I am recently trying to install amber 10 on Xeon emt64t Linux machine using
gcc/gfortran compilers, and I am receiving a following error message while
linking sander:

../lmod/lmod.a(dsaupd.o): In function `dsaupd_':
_dsaupd.f:(.text+0x66): undefined reference to `ambsecond_'
_dsaupd.f:(.text+0x57f): undefined reference to `ambsecond_'
../lmod/lmod.a(dsaup2.o): In function `dsaup2_':
_dsaup2.f:(.text+0x231): undefined reference to `ambsecond_'
_dsaup2.f:(.text+0x28e): undefined reference to `ambsecond_'
_dsaup2.f:(.text+0x49c): undefined reference to `ambsecond_'
../lmod/lmod.a(dsaup2.o):_dsaup2.f:(.text+0x7aa): more undefined references to
`ambsecond_' follow
collect2: ld returned 1 exit status

I have made sure that all serial amber build src is successfuly compiled, and
I have checked using nm command if ambsecond_ exists in any object file and it
is undefined in all of them.

I would be grateful for any help concerning this issue.


Zuzanna K. Scigacz, HPC systems administrator
Poznan Supercomputing and Networking Center
Home page: http://platyna.platinum.linux.pl/.
Carpe diem! Seize the day boys! Make your lifes extraordinary! -- John Keating
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Received on Thu Apr 01 2010 - 05:30:03 PDT
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