On Tue, Mar 30, 2010 at 8:36 AM, case <case.biomaps.rutgers.edu> wrote:
> On Tue, Mar 30, 2010, MENZIES G. (569332) wrote:
>>
>> I'm having a problem when making the amber program using make -f
>> Makefile_at. I have the following error:
>
> You probably need to install flex on your system. The configure script
> gives you a warning about this, but it is not a fatal error, and can be
> easily missed.
>
> Developers: can someone remove flex from their system, and see if the current
> RC candidate is OK?...thx
>
No go...
make[1]: Leaving directory
`/home/swails/newamber/03.29.10/amber11/AmberTools/src/cifparse'
(cd nab && make install )
make[1]: Entering directory
`/home/swails/newamber/03.29.10/amber11/AmberTools/src/nab'
gcc -DBINDIR='"."' -DINCDIR='"."' -DLIBDIR='"."'
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \
-DCC='"gcc"' -DCPP='"/home/swails/newamber/03.29.10/amber11/bin/ucpp
-l"' -DFLIBS='"/home/swails/newamber/03.29.10/amber11/lib/arpack.a
/home/swails/newamber/03.29.10/amber11/lib/lapack.a
/home/swails/newamber/03.29.10/amber11/lib/blas.a -lgfortran "' -o
nab nab.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o
nab2c.o nab2c.c
flex nablex.l
make[1]: flex: Command not found
make[1]: *** [lex.yy.c] Error 127
make[1]: Leaving directory
`/home/swails/newamber/03.29.10/amber11/AmberTools/src/nab'
make: *** [serial] Error 2
> ...dac
>
>
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>
--
---------------------------------------
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Tue Mar 30 2010 - 11:00:06 PDT
