the need for this depends on the highest temperature you are going to use.
at 400K I think these problems are very unlikely. personally I do not
benefit from going to higher than 400K. if you do, such as 600-700K, then
you really need to use restraints. you might need to make your own script to
create them.
On Mon, Mar 29, 2010 at 7:49 AM, maya maya <harish.maya83.gmail.com> wrote:
> DEAR AMBER !
>
> I have seen the REMD tutorial , i have a doubt regarding the step
>
> $AMBERHOME/exe/makeCHIR_RST ala10.pdb
> ala10_chir.dat<
> http://ambermd.org/tutorials/advanced/tutorial7/files/ala10_chir.dat>
>
> which has been given in the tutorial . It is meant for proteins, but if one
> would like to REMD for DNA
> how to make this .
>
> If any one can give example , it will be better for my understanding .
>
>
> regards
> maya
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> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Mon Mar 29 2010 - 05:30:02 PDT
