On Fri, Mar 26, 2010 at 7:26 PM, qiaoyan <qiaoyan.dicp.ac.cn> wrote:
> Dear professor:
> I try to use your method in vmd, but I don't know how to do this, while file should I import into vmd, when I import a pdb file into it, and "set protein [atomselect top "mrna25"]", there is an error "atomselect: cannot parse selection text: mrna25", I really don't know what to do.
>
"mrna25" should be something some type of selection that vmd
understands. For instance "all" for the entire protein. "all not
water" for the whole system without waters, "resid 1 to 25" for the
first 25 residues, etc.
Good luck!
Jason
> Best Regards.
>
> Yours sincerely,
> Yan Qiao.
> 2010-03-26
> -----------------------------------------------
> State Key Lab of Molecular Reaction Dynamics (SKLMRD),
> Dalian Institute of Chemical Physics(DICP),
> the Chinese Academy of Sciences(CAS),
> Zhongshan Road457, Dalian City,
> Liaoning Province 116023,P. R. China
> E-mail: qiaoyan.dicp.ac.cn
> Office Phone: +86+411+84379352
>
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--
---------------------------------------
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Fri Mar 26 2010 - 20:00:02 PDT
