Re: [AMBER] Script for creating topology files , running minimization and MD simulation using amoeba force field

From: case <>
Date: Thu, 25 Mar 2010 13:39:36 -0400

On Thu, Mar 25, 2010, Workalemhu Berhanu wrote:

> I am trying to do md simulation on a small peptide with explicit water
> as a solvent using amoeba force filed in amber 10. Would you please
> provide me a script for creating the topology files using amoeba force
> field, the minimization and MD simulation?

It's not clear what you have already read. Please see the Users' Manual
section on the amoeba force field. There are samples in

...good luck...dac

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Received on Thu Mar 25 2010 - 11:00:07 PDT
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