[AMBER] difference in output from bnda and fd_helix functions

From: Igor Sizov <iesizov.gmail.com>
Date: Wed, 24 Mar 2010 14:19:08 -0400

Hi,

I created two pdb files for the same DNA sequence with bdna and fd_helix
functions:

======================================================

molecule m;

m = bdna( "tcgatcgatcgatcgatcgatcgat", "dna" );

putpdb( "mol1.pdb", m );

======================================================

molecule m;

m = fd_helix( "abdna", "tcgatcgatcgatcgatcgatcgat", "dna" );

putpdb( "mol2.pdb", m, );

======================================================


These files are almost the same but bdna created two chains in the ChainID
column. Is this difference critical? Or I can use both files equally.

Thank you in advance,
Igor
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Mar 24 2010 - 11:30:02 PDT
Custom Search